RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	CCAR1	Q8IX12	1150 aa	Known RBP	13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	MB21D1	Q8N884	522 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	C4orf32	Q8N8J7	132 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	ZNF579	Q8NAF0	562 aa	Known RBP	13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	REPS2	Q8NFH8	660 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	SYAP1	Q96A49	352 aa	Predicted RBP	13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	FERMT2	Q96AC1	680 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	MAF1	Q9H063	256 aa		13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.4	□□□□□ -0.26
CLN6-223	ENST00000637823	SPDYE3	A6NKU9	549 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	LAD1	O00515	517 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	CFB	P00751	764 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	CETP	P11597	493 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	ALAS1	P13196	640 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	OSBP	P22059	807 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	GHRHR	Q02643	423 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	LETM2	Q2VYF4	491 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	CAVIN1	Q6NZI2	390 aa	Known RBP	13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	LBX2	Q6XYB7	198 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	CLEC4D	Q8WXI8	215 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	TRERF1	Q96PN7	1200 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	ANO3	Q9BYT9	981 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	FBXO2	Q9UK22	296 aa	Predicted RBP	13.39	□□□□□ -0.27
CLN6-223	ENST00000637823		A0A0G2JMZ2	1700 aa		13.39	□□□□□ -0.27
CLN6-223	ENST00000637823	CCNT1	O60563	726 aa	Known RBP	13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	ZBTB48	P10074	688 aa	Predicted RBP	13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	GCFC2	P16383	781 aa	Known RBP	13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	TAL1	P17542	331 aa	Predicted RBP	13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	LIG1	P18858	919 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	PRPH	P41219	470 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	HSD17B4	P51659	736 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	IRX3	P78415	501 aa	Predicted RBP	13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	TMEM132B	Q14DG7	1078 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	PPP4R3A	Q6IN85	833 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	GPAT2	Q6NUI2	795 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	CCDC73	Q6ZRK6	1079 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	FSIP1	Q8NA03	581 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	MRPS27	Q92552	414 aa	Known RBP	13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	TBC1D5	Q92609	795 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	P2RX7	Q99572	595 aa	Known RBP	13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	ASCC2	Q9H1I8	757 aa	Predicted RBP	13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	EHMT1	Q9H9B1	1298 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	ZNF214	Q9UL59	606 aa	Predicted RBP	13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	SLC45A1	Q9Y2W3	748 aa		13.38	□□□□□ -0.27
CLN6-223	ENST00000637823	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	CYP3A7-CYP3A51P	A0A087WV96	503 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	FAM237A	A0A1B0GTK4	181 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	EDIL3	O43854	480 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	CYP3A4	P08684	503 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	CYP3A7	P24462	503 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	HOXA13	P31271	388 aa	Predicted RBP	13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	SREBF1	P36956	1147 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	STAT3	P40763	770 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	HUNK	P57058	714 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	FAM160A1	Q05DH4	1040 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	SPRYD7	Q5W111	196 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	RESP18	Q5W5W9	173 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	SNRNP48	Q6IEG0	339 aa	Known RBP	13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	MOXD1	Q6UVY6	613 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	MS4A4A	Q96JQ5	239 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	CLIC6	Q96NY7	704 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	TEX13B	Q9BXU2	312 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823	PASK	Q96RG2	1323 aa		13.37	□□□□□ -0.27
CLN6-223	ENST00000637823		A0A1B0GVL5	298 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	KIF3C	O14782	793 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	NEMF	O60524	1076 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	LETM1	O95202	739 aa	Predicted RBP	13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	HERVK_113	P62684	666 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	ARHGAP4	P98171	946 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	MUM1L1	Q5H9M0	696 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	CCDC183	Q5T5S1	534 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	SHC4	Q6S5L8	630 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	FCHSD1	Q86WN1	690 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	SMC1B	Q8NDV3	1235 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	ENGASE	Q8NFI3	743 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	CRYGN	Q8WXF5	182 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	GZF1	Q9H116	711 aa	Predicted RBP	13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	GOLPH3L	Q9H4A5	285 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	RNF146	Q9NTX7	359 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	DDX19A	Q9NUU7	478 aa	Known RBP	13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	DACT1	Q9NYF0	836 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	FAM13B	Q9NYF5	915 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	TMEM63C	Q9P1W3	806 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	PNMA3	Q9UL41	463 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	RABGAP1	Q9Y3P9	1069 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	MRVI1	Q9Y6F6	885 aa		13.36	□□□□□ -0.27
CLN6-223	ENST00000637823	CCL15-CCL14	A0A0B4J2E2	113 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	NFIB	O00712	420 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	NR1I2	O75469	434 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	OR52Z1	P0C646	297 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	CIITA	P33076	1130 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	LONP1	P36776	959 aa	Known RBP	13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	SNW1	Q13573	536 aa	Known RBP	13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	PLS1	Q14651	629 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	CCL15	Q16663	113 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	DTHD1	Q6ZMT9	781 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	RNF207	Q6ZRF8	634 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	ANKRD23	Q86SG2	305 aa		13.35	□□□□□ -0.27
CLN6-223	ENST00000637823	RIOX2	Q8IUF8	465 aa		13.35	□□□□□ -0.27

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