RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 CCDC81Q6ZN84 652 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 REC114Q7Z4M0 266 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 SLCO6A1Q86UG4 719 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 PALM2Q8IXS6 379 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 CKAP2LQ8IYA6 745 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 LGI4Q8N135 537 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 ZNF655Q8N720 491 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-209ENST00000552008 FBXO27Q8NI29 283 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 PMFBP1Q8TBY8 1022 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 RASGRP4Q8TDF6 673 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 ANAPC16Q96DE5 110 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 CHFRQ96EP1 664 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 SRRTQ9BXP5 876 aaKnown RBP3.4□□□□□ -1.87
LIMA1-209ENST00000552008 RNF38Q9H0F5 515 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 BRMS1Q9HCU9 246 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 GINM1Q9NU53 330 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 STRIP2Q9ULQ0 834 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 INVSQ9Y283 1065 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 MRVI1Q9Y6F6 885 aa3.4□□□□□ -1.87
LIMA1-209ENST00000552008 A0A1W2PQ45 241 aaPredicted RBP3.39□□□□□ -1.87
LIMA1-209ENST00000552008 A0A1W2PQY0 241 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 IGSF3O75054 1194 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 IMPDH2P12268 514 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 PLCG1P19174 1290 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 GARTP22102 1010 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 MC3RP41968 323 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 EIF6P56537 245 aaKnown RBP3.39□□□□□ -1.87
LIMA1-209ENST00000552008 NANOS3P60323 173 aaKnown RBP3.39□□□□□ -1.87
LIMA1-209ENST00000552008 ICAM4Q14773 271 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 PPP2R5EQ16537 467 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 SOGA3Q5TF21 947 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 SLITRK4Q8IW52 837 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 ADAMTS17Q8TE56 1095 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 DNAJC2Q99543 621 aaKnown RBP3.39□□□□□ -1.87
LIMA1-209ENST00000552008 HIRIP3Q9BW71 556 aaPredicted RBP3.39□□□□□ -1.87
LIMA1-209ENST00000552008 ZNF341Q9BYN7 854 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 TRIM55Q9BYV6 548 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 KCNQ5Q9NR82 932 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 IMPACTQ9P2X3 320 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 PCDHB14Q9Y5E9 798 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 HCFC2Q9Y5Z7 792 aa3.39□□□□□ -1.87
LIMA1-209ENST00000552008 FAM221AA4D161 298 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 NCAM1P13591 858 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 LMO1P25800 156 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 CRKP46108 304 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 LRRFIP1Q32MZ4 808 aaKnown RBP3.38□□□□□ -1.87
LIMA1-209ENST00000552008 B3GNT8Q7Z7M8 397 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 MCF2L2Q86YR7 1114 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 GMLQ99445 158 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 LRRC3Q9BY71 257 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 ERVK13-1Q9NX77 482 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 KLHL3Q9UH77 587 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 PPT2Q9UMR5 302 aa3.38□□□□□ -1.87
LIMA1-209ENST00000552008 SHROOM4Q9ULL8 1493 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 HTR3BO95264 441 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 CYBBP04839 570 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 FGRP09769 529 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 SOX9P48436 509 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 CLCQ05315 142 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 KIAA2012Q0VF49 1180 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 RGL3Q3MIN7 710 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 TNNI3KQ59H18 835 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 ZNF585AQ6P3V2 769 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 BORAQ6PGQ7 559 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 PAQR3Q6TCH7 311 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 TTLL7Q6ZT98 887 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 SLFN12Q8IYM2 578 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 PHACTR4Q8IZ21 702 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 REXO1Q8N1G1 1221 aaKnown RBP3.37□□□□□ -1.87
LIMA1-209ENST00000552008 OR6P1Q8NGX9 317 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 ARMC5Q96C12 935 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 CEP89Q96ST8 783 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 CD248Q9HCU0 757 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 SPATA6Q9NWH7 488 aaPredicted RBP3.37□□□□□ -1.87
LIMA1-209ENST00000552008 CORINQ9Y5Q5 1042 aa3.37□□□□□ -1.87
LIMA1-209ENST00000552008 A0A1W2PQ27 194 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 A0A1W2PQ64 194 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 A0A1W2PQC6 194 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 A0A1W2PQD8 194 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 SRGAP3O43295 1099 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 ASGR2P07307 311 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 DBHP09172 617 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 RAG1P15918 1043 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 ENDOUP21128 410 aaKnown RBP3.36□□□□□ -1.87
LIMA1-209ENST00000552008 CEBPAP49715 358 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-209ENST00000552008 SPDYAQ5MJ70 313 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 CDCP2Q5VXM1 449 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-209ENST00000552008 ANKS3Q6ZW76 656 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 TMC3Q7Z5M5 1100 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 FAM124AQ86V42 546 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 CCDC74BQ96LY2 380 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 NOX5Q96PH1 765 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 JMJD8Q96S16 334 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 DEF6Q9H4E7 631 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 ZNF408Q9H9D4 720 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 REV1Q9UBZ9 1251 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 ZNRF3Q9ULT6 936 aa3.36□□□□□ -1.87
LIMA1-209ENST00000552008 POLR3KQ9Y2Y1 108 aaPredicted RBP3.36□□□□□ -1.87
LIMA1-209ENST00000552008 NPIPB8E9PQR5 432 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms