RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 A0A087WZG4 1122 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 ITGB3P05106 788 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 ADAM17P78536 824 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 SLC9A5Q14940 896 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 CCDC27Q2M243 656 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 ZNF326Q5BKZ1 582 aaKnown RBP7.17□□□□□ -1.26
VPS50-219ENST00000495039 EEF1DP3Q658K8 133 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 RCSD1Q6JBY9 416 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 RNF34Q969K3 372 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 PEX11GQ96HA9 241 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 ZDHHC15Q96MV8 337 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 FAM86C1Q9NVL1 165 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 ZNF451Q9Y4E5 1061 aa7.17□□□□□ -1.26
VPS50-219ENST00000495039 SARSP49591 514 aaKnown RBP7.16□□□□□ -1.26
VPS50-219ENST00000495039 TCEAL1Q15170 157 aa7.16□□□□□ -1.26
VPS50-219ENST00000495039 TTLL7Q6ZT98 887 aa7.16□□□□□ -1.26
VPS50-219ENST00000495039 NETO2Q8NC67 525 aa7.16□□□□□ -1.26
VPS50-219ENST00000495039 SMARCC2Q8TAQ2 1214 aa7.16□□□□□ -1.26
VPS50-219ENST00000495039 CPA5Q8WXQ8 436 aa7.16□□□□□ -1.26
VPS50-219ENST00000495039 RXFP1Q9HBX9 757 aa7.16□□□□□ -1.26
VPS50-219ENST00000495039 DIS3Q9Y2L1 958 aaKnown RBP7.16□□□□□ -1.26
VPS50-219ENST00000495039 GUCY2CP25092 1073 aa7.15□□□□□ -1.26
VPS50-219ENST00000495039 ZYXQ15942 572 aaKnown RBP7.15□□□□□ -1.26
VPS50-219ENST00000495039 UNC5AQ6ZN44 842 aa7.15□□□□□ -1.26
VPS50-219ENST00000495039 LZTR1Q8N653 840 aa7.15□□□□□ -1.26
VPS50-219ENST00000495039 BCL2L13Q9BXK5 485 aa7.15□□□□□ -1.26
VPS50-219ENST00000495039 BCAS3Q9H6U6 928 aa7.15□□□□□ -1.26
VPS50-219ENST00000495039 ZBTB7AO95365 584 aa7.14□□□□□ -1.27
VPS50-219ENST00000495039 PDIA4P13667 645 aaKnown RBP7.14□□□□□ -1.27
VPS50-219ENST00000495039 TNFRSF1AP19438 455 aa7.14□□□□□ -1.27
VPS50-219ENST00000495039 CACNB2Q08289 660 aaPredicted RBP7.14□□□□□ -1.27
VPS50-219ENST00000495039 FBXW10Q5XX13 1052 aa7.14□□□□□ -1.27
VPS50-219ENST00000495039 KRTAP5-3Q6L8H2 238 aa7.14□□□□□ -1.27
VPS50-219ENST00000495039 ZNF761Q86XN6 746 aaPredicted RBP7.14□□□□□ -1.27
VPS50-219ENST00000495039 RBBP8NLQ8NC74 664 aaPredicted RBP7.14□□□□□ -1.27
VPS50-219ENST00000495039 ZNF214Q9UL59 606 aaPredicted RBP7.14□□□□□ -1.27
VPS50-219ENST00000495039 RWDD3Q9Y3V2 267 aa7.14□□□□□ -1.27
VPS50-219ENST00000495039 AURKAO14965 403 aa7.13□□□□□ -1.27
VPS50-219ENST00000495039 CBFA2T2O43439 604 aa7.13□□□□□ -1.27
VPS50-219ENST00000495039 ZXDAP98168 799 aa7.13□□□□□ -1.27
VPS50-219ENST00000495039 RBM10P98175 930 aaKnown RBP7.13□□□□□ -1.27
VPS50-219ENST00000495039 PPP2R5DQ14738 602 aa7.13□□□□□ -1.27
VPS50-219ENST00000495039 GIPC2Q8TF65 315 aa7.13□□□□□ -1.27
VPS50-219ENST00000495039 ZBTB8AQ96BR9 441 aa7.13□□□□□ -1.27
VPS50-219ENST00000495039 NOX5Q96PH1 765 aa7.13□□□□□ -1.27
VPS50-219ENST00000495039 RBM15Q96T37 977 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS50-219ENST00000495039 SPATA6Q9NWH7 488 aaPredicted RBP7.13□□□□□ -1.27
VPS50-219ENST00000495039 WHRNQ9P202 907 aa7.13□□□□□ -1.27
VPS50-219ENST00000495039 SMARCA5O60264 1052 aaPredicted RBP7.12□□□□□ -1.27
VPS50-219ENST00000495039 TTC9BQ8N6N2 239 aa7.12□□□□□ -1.27
VPS50-219ENST00000495039 GBP3Q9H0R5 595 aa7.12□□□□□ -1.27
VPS50-219ENST00000495039 FBLN5Q9UBX5 448 aa7.12□□□□□ -1.27
VPS50-219ENST00000495039 STXBP3O00186 592 aa7.11□□□□□ -1.27
VPS50-219ENST00000495039 AKAP8O43823 692 aaKnown RBP7.11□□□□□ -1.27
VPS50-219ENST00000495039 SEPHS1P49903 392 aa7.11□□□□□ -1.27
VPS50-219ENST00000495039 CPZQ66K79 652 aa7.11□□□□□ -1.27
VPS50-219ENST00000495039 TMEM87AQ8NBN3 555 aa7.11□□□□□ -1.27
VPS50-219ENST00000495039 ADAMTS17Q8TE56 1095 aa7.11□□□□□ -1.27
VPS50-219ENST00000495039 SAMD11Q96NU1 681 aa7.11□□□□□ -1.27
VPS50-219ENST00000495039 HAUS7Q99871 368 aa7.11□□□□□ -1.27
VPS50-219ENST00000495039 C1QTNF3-AMACRE9PGA6 284 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 MATN3O15232 486 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 PLATP00750 562 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 CYP2C8P10632 490 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 WWC2Q6AWC2 1192 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 RUFY4Q6ZNE9 571 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 LINC00482Q8N8I6 264 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 ADCY4Q8NFM4 1077 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 USP33Q8TEY7 942 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 MTA3Q9BTC8 594 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 MCMBPQ9BTE3 642 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 PCDH18Q9HCL0 1135 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 GULP1Q9UBP9 304 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 PPT2Q9UMR5 302 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 BACE2Q9Y5Z0 518 aa7.1□□□□□ -1.27
VPS50-219ENST00000495039 TRBV23OR9-2A0A075B6M9 112 aa7.09□□□□□ -1.27
VPS50-219ENST00000495039 SMAD4Q13485 552 aaKnown RBP7.09□□□□□ -1.27
VPS50-219ENST00000495039 DDX11Q96FC9 970 aa7.09□□□□□ -1.27
VPS50-219ENST00000495039 LOXL4Q96JB6 756 aa7.09□□□□□ -1.27
VPS50-219ENST00000495039 C1QTNF3Q9BXJ4 246 aa7.09□□□□□ -1.27
VPS50-219ENST00000495039 SLC12A7Q9Y666 1083 aa7.09□□□□□ -1.27
VPS50-219ENST00000495039 C2orf71A6NGG8 1288 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 ZNF20P17024 532 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 PAMP19021 973 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 ZNF76P36508 570 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 KIAA2012Q0VF49 1180 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 DPY19L1Q2PZI1 675 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 HEATR6Q6AI08 1181 aaKnown RBP7.08□□□□□ -1.28
VPS50-219ENST00000495039 CPNE8Q86YQ8 564 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 C8orf49Q96NF6 230 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 KRTAP3-1Q9BYR8 98 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 KLHL25Q9H0H3 589 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS50-219ENST00000495039 SRRDQ9UH36 339 aa7.08□□□□□ -1.28
VPS50-219ENST00000495039 LTBP3Q9NS15 1303 aa7.07□□□□□ -1.28
VPS50-219ENST00000495039 NPHP3-ACAD11A0A0J9YXS1 232 aa7.07□□□□□ -1.28
VPS50-219ENST00000495039 VAMP4O75379 141 aa7.07□□□□□ -1.28
VPS50-219ENST00000495039 PPM1BO75688 479 aa7.07□□□□□ -1.28
VPS50-219ENST00000495039 AMPD2Q01433 879 aa7.07□□□□□ -1.28
VPS50-219ENST00000495039 RGL3Q3MIN7 710 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms