RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 MBOAT7Q96N66 472 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 NAP1L5Q96NT1 182 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-222ENST00000474655 NUP88Q99567 741 aaPredicted RBP13.78□□□□□ -0.2
SYNE1-222ENST00000474655 TMEM39BQ9GZU3 492 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 RHOBTB3O94955 611 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 PLCG1P19174 1290 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 CAP2P40123 477 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 ARID5BQ14865 1188 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 NBPF9Q3BBW0 867 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 CDKAL1Q5VV42 579 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 FBXO11Q86XK2 927 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 VSTM4Q8IW00 320 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 TRMT44Q8IYL2 757 aaKnown RBP13.78□□□□□ -0.2
SYNE1-222ENST00000474655 CCDC150Q8NCX0 1101 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 RAB34Q9BZG1 259 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 VEZTQ9HBM0 779 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 GOPCQ9HD26 462 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 KCND1Q9NSA2 647 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 INTS13Q9NVM9 706 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 SYNRGQ9UMZ2 1314 aa13.78□□□□□ -0.2
SYNE1-222ENST00000474655 RAD21O60216 631 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 TXKP42681 527 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 ECE1P42892 770 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 TRAF1Q13077 416 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 TMEM266Q2M3C6 531 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 APTXQ7Z2E3 356 aaKnown RBP13.77□□□□□ -0.21
SYNE1-222ENST00000474655 TMC6Q7Z403 805 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 C17orf53Q8N3J3 647 aaPredicted RBP13.77□□□□□ -0.21
SYNE1-222ENST00000474655 ACER1Q8TDN7 264 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 HAS1Q92839 578 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 C7orf25Q9BPX7 421 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 SAMSN1Q9NSI8 373 aaKnown RBP13.77□□□□□ -0.21
SYNE1-222ENST00000474655 STK17AQ9UEE5 414 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 DDX25Q9UHL0 483 aaKnown RBP13.77□□□□□ -0.21
SYNE1-222ENST00000474655 RWDD2AQ9UIY3 292 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 PRR12Q9ULL5 1215 aa13.77□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L15C9J2P7 530 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L13C9JLJ4 530 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L11C9JVI0 530 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L18D6R9N7 530 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L22D6RA61 530 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L17D6RBQ6 530 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L19D6RCP7 530 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L20D6RJB6 530 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 FOSP01100 380 aaPredicted RBP13.76□□□□□ -0.21
SYNE1-222ENST00000474655 KCNJ6P48051 423 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 STAT2P52630 851 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L24Q0WX57 530 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 KIAA1755Q5JYT7 1200 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 ARMCX5Q6P1M9 558 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 USP17L6PQ6QN14 398 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 CDAN1Q8IWY9 1227 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 SMYD4Q8IYR2 804 aaPredicted RBP13.76□□□□□ -0.21
SYNE1-222ENST00000474655 CALML4Q96GE6 196 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 GTPBP4Q9BZE4 634 aaKnown RBP13.76□□□□□ -0.21
SYNE1-222ENST00000474655 LRWD1Q9UFC0 647 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 A0A1B0GTH6 734 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 LRRC10BA6NIK2 292 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 PIK3CDO00329 1044 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 OPLAHO14841 1288 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 SLC26A4O43511 780 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 SKILP12757 684 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 GRB10Q13322 594 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 NR1I3Q14994 352 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 CNNM4Q6P4Q7 775 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 GIMAP8Q8ND71 665 aaPredicted RBP13.76□□□□□ -0.21
SYNE1-222ENST00000474655 RASSF8Q8NHQ8 419 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 TEPSINQ96N21 525 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 ANO3Q9BYT9 981 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 TRIM9Q9C026 710 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 SH2D4AQ9H788 454 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 VCPKMTQ9H867 229 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 KCNMB3Q9NPA1 279 aa13.76□□□□□ -0.21
SYNE1-222ENST00000474655 DICER1Q9UPY3 1922 aaKnown RBP13.75□□□□□ -0.21
SYNE1-222ENST00000474655 PHF20L1A8MW92 1017 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 FZD9O00144 591 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 ASNSP08243 561 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 CDK11BP21127 795 aaKnown RBP13.75□□□□□ -0.21
SYNE1-222ENST00000474655 AMPD3Q01432 767 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 PAK1Q13153 545 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 TBX2Q13207 712 aaPredicted RBP13.75□□□□□ -0.21
SYNE1-222ENST00000474655 KMT5BQ4FZB7 885 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 COBLL1Q53SF7 1204 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 HYIQ5T013 277 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 ADSSL1Q8N142 457 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 PNMA5Q96PV4 448 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 P2RX7Q99572 595 aaKnown RBP13.75□□□□□ -0.21
SYNE1-222ENST00000474655 GINM1Q9NU53 330 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 BLOC1S4Q9NUP1 217 aa13.75□□□□□ -0.21
SYNE1-222ENST00000474655 SHTN1A0MZ66 631 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 SREBF1P36956 1147 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 PRCPP42785 496 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 TNFAIP1Q13829 316 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 RASA3Q14644 834 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 TMEM119Q4V9L6 283 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 KLHL10Q6JEL2 608 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 SPICE1Q8N0Z3 855 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 CHURC1Q8WUH1 139 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 CTAGE1Q96RT6 745 aa13.74□□□□□ -0.21
SYNE1-222ENST00000474655 RANBP17Q9H2T7 1088 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms