RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 CYBAP13498 195 aa16.42■□□□□ 0.22
BRCA1-211ENST00000472490 TAL1P17542 331 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-211ENST00000472490 CCND3P30281 292 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-211ENST00000472490 CNTN2Q02246 1040 aa16.42■□□□□ 0.22
BRCA1-211ENST00000472490 CCDC82Q8N4S0 544 aa16.42■□□□□ 0.22
BRCA1-211ENST00000472490 PIBF1Q8WXW3 757 aa16.42■□□□□ 0.22
BRCA1-211ENST00000472490 ZNF274Q96GC6 653 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-211ENST00000472490 ALDH8A1Q9H2A2 487 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-211ENST00000472490 ABHD16BQ9H3Z7 469 aa16.42■□□□□ 0.22
BRCA1-211ENST00000472490 RBM27Q9P2N5 1060 aaKnown RBP16.42■□□□□ 0.22
BRCA1-211ENST00000472490 NID2Q14112 1375 aa16.41■□□□□ 0.22
BRCA1-211ENST00000472490 SEPT4O43236 478 aa16.41■□□□□ 0.22
BRCA1-211ENST00000472490 PPP1R11O60927 126 aaPredicted RBP16.41■□□□□ 0.22
BRCA1-211ENST00000472490 CFBP00751 764 aa16.41■□□□□ 0.22
BRCA1-211ENST00000472490 EN2P19622 333 aaPredicted RBP16.41■□□□□ 0.22
BRCA1-211ENST00000472490 RGS19P49795 217 aa16.41■□□□□ 0.22
BRCA1-211ENST00000472490 TOB2Q14106 344 aaPredicted RBP16.41■□□□□ 0.22
BRCA1-211ENST00000472490 SLC35G1Q2M3R5 365 aa16.41■□□□□ 0.22
BRCA1-211ENST00000472490 SLC30A10Q6XR72 485 aa16.41■□□□□ 0.22
BRCA1-211ENST00000472490 ARMCX2Q7L311 632 aa16.41■□□□□ 0.22
BRCA1-211ENST00000472490 CMTR1Q8N1G2 835 aaKnown RBP16.41■□□□□ 0.22
BRCA1-211ENST00000472490 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.41■□□□□ 0.22
BRCA1-211ENST00000472490 DDX20Q9UHI6 824 aaKnown RBP16.41■□□□□ 0.22
BRCA1-211ENST00000472490 HTTP42858 3142 aa16.4■□□□□ 0.22
BRCA1-211ENST00000472490 SOWAHBA6NEL2 793 aa16.4■□□□□ 0.22
BRCA1-211ENST00000472490 GCOM1H8Y6P7 765 aaPredicted RBP16.4■□□□□ 0.22
BRCA1-211ENST00000472490 hCG_1984214I3L0E3 225 aa16.4■□□□□ 0.22
BRCA1-211ENST00000472490 POLR2MP0CAP2 368 aa16.4■□□□□ 0.22
BRCA1-211ENST00000472490 AKR1A1P14550 325 aa16.4■□□□□ 0.22
BRCA1-211ENST00000472490 PDIA3P30101 505 aaKnown RBP16.4■□□□□ 0.22
BRCA1-211ENST00000472490 ALDH5A1P51649 535 aaPredicted RBP16.4■□□□□ 0.22
BRCA1-211ENST00000472490 CPLX2Q6PUV4 134 aaKnown RBP16.4■□□□□ 0.22
BRCA1-211ENST00000472490 ZNF713Q8N859 430 aaPredicted RBP16.4■□□□□ 0.22
BRCA1-211ENST00000472490 ANKLE1Q8NAG6 615 aa16.4■□□□□ 0.22
BRCA1-211ENST00000472490 IL27Q8NEV9 243 aa16.4■□□□□ 0.22
BRCA1-211ENST00000472490 NSUN6Q8TEA1 469 aaKnown RBP16.4■□□□□ 0.22
BRCA1-211ENST00000472490 C22orf23Q9BZE7 217 aa16.4■□□□□ 0.22
BRCA1-211ENST00000472490 CRISPLD2Q9H0B8 497 aa16.4■□□□□ 0.22
BRCA1-211ENST00000472490 SNAI1O95863 264 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-211ENST00000472490 CDC27P30260 824 aa16.39■□□□□ 0.21
BRCA1-211ENST00000472490 ADD1P35611 737 aaKnown RBP16.39■□□□□ 0.21
BRCA1-211ENST00000472490 HSD17B4P51659 736 aa16.39■□□□□ 0.21
BRCA1-211ENST00000472490 AKAP17AQ02040 695 aaKnown RBP16.39■□□□□ 0.21
BRCA1-211ENST00000472490 GHRHRQ02643 423 aa16.39■□□□□ 0.21
BRCA1-211ENST00000472490 ACVR2BQ13705 512 aa16.39■□□□□ 0.21
BRCA1-211ENST00000472490 PRAMEF19Q5SWL8 479 aa16.39■□□□□ 0.21
BRCA1-211ENST00000472490 TEX2Q8IWB9 1127 aa16.39■□□□□ 0.21
BRCA1-211ENST00000472490 SYTL5Q8TDW5 730 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-211ENST00000472490 CUL5Q93034 780 aa16.39■□□□□ 0.21
BRCA1-211ENST00000472490 FGD4Q96M96 766 aa16.39■□□□□ 0.21
BRCA1-211ENST00000472490 FAM217BQ9NTX9 383 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-211ENST00000472490 ZHX1Q9UKY1 873 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-211ENST00000472490 FAM184BQ9ULE4 1060 aa16.39■□□□□ 0.21
BRCA1-211ENST00000472490 V9GY48 417 aaPredicted RBP16.39■□□□□ 0.21
BRCA1-211ENST00000472490 CPLX1O14810 134 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 ZNF865P0CJ78 1059 aaPredicted RBP16.38■□□□□ 0.21
BRCA1-211ENST00000472490 RARBP10826 455 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 RBM25P49756 843 aaKnown RBP16.38■□□□□ 0.21
BRCA1-211ENST00000472490 NEK4P51957 841 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 PDE4DQ08499 809 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 HEATR3Q7Z4Q2 680 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 MORC4Q8TE76 937 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 IWS1Q96ST2 819 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 RMDN3Q96TC7 470 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 OGDHLQ9ULD0 1010 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 CNTNAP5Q8WYK1 1306 aa16.38■□□□□ 0.21
BRCA1-211ENST00000472490 FUT2Q10981 343 aa16.37■□□□□ 0.21
BRCA1-211ENST00000472490 ARHGEF16Q5VV41 709 aa16.37■□□□□ 0.21
BRCA1-211ENST00000472490 LHX8Q68G74 356 aa16.37■□□□□ 0.21
BRCA1-211ENST00000472490 TRIM22Q8IYM9 498 aa16.37■□□□□ 0.21
BRCA1-211ENST00000472490 ARRDC4Q8NCT1 418 aa16.37■□□□□ 0.21
BRCA1-211ENST00000472490 TRPV1Q8NER1 839 aa16.37■□□□□ 0.21
BRCA1-211ENST00000472490 SLKQ9H2G2 1235 aaPredicted RBP16.37■□□□□ 0.21
BRCA1-211ENST00000472490 PSTPIP2Q9H939 334 aa16.37■□□□□ 0.21
BRCA1-211ENST00000472490 VTA1Q9NP79 307 aa16.37■□□□□ 0.21
BRCA1-211ENST00000472490 DOCK3Q8IZD9 2030 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 PIK3CDO00329 1044 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 OPLAHO14841 1288 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 CDKL5O76039 1030 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 IFNAR1P17181 557 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 AK2P54819 239 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 CCT2P78371 535 aaKnown RBP16.36■□□□□ 0.21
BRCA1-211ENST00000472490 MLLT1Q03111 559 aaPredicted RBP16.36■□□□□ 0.21
BRCA1-211ENST00000472490 PPP1R18Q6NYC8 613 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 SMARCC2Q8TAQ2 1214 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 CCDC12Q8WUD4 166 aaPredicted RBP16.36■□□□□ 0.21
BRCA1-211ENST00000472490 TBC1D5Q92609 795 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 SHISA4Q96DD7 197 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 PURBQ96QR8 312 aaKnown RBP16.36■□□□□ 0.21
BRCA1-211ENST00000472490 RNF26Q9BY78 433 aaPredicted RBP16.36■□□□□ 0.21
BRCA1-211ENST00000472490 GLT8D2Q9H1C3 349 aa16.36■□□□□ 0.21
BRCA1-211ENST00000472490 hCG_1642624A0A1W2PR95 340 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 PRPF3O43395 683 aaKnown RBP16.35■□□□□ 0.21
BRCA1-211ENST00000472490 FARP2O94887 1054 aaPredicted RBP16.35■□□□□ 0.21
BRCA1-211ENST00000472490 SCG2P13521 617 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 EDNRBP24530 442 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 STXBP2Q15833 593 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 PFKFB3Q16875 520 aaPredicted RBP16.35■□□□□ 0.21
BRCA1-211ENST00000472490 CCDC144BQ3MJ40 725 aa16.35■□□□□ 0.21
BRCA1-211ENST00000472490 IQSEC1Q6DN90 963 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms