RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TMEM94Q12767 1356 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 ENC1O14682 589 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 LLGL1Q15334 1064 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 KRT26Q7Z3Y9 468 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 RGS12O14924 1447 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 TTBK2Q6IQ55 1244 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 PPP1R16BQ96T49 567 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 VCX3BQ9H321 246 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 RAD17O75943 681 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 MCTP2Q6DN12 878 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 EEPD1Q7L9B9 569 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 NUF2Q9BZD4 464 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 AKT3Q9Y243 479 aa18.8■□□□□ 0.6
PTPRF-209ENST00000438120 CLIC2O15247 247 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 H2AFZP0C0S5 128 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 KCTD2Q14681 263 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 MESDQ14696 234 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 H2AFVQ71UI9 128 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 LARP4BQ92615 738 aaKnown RBP18.79■□□□□ 0.6
PTPRF-209ENST00000438120 P3H4Q92791 437 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 HAUS2Q9NVX0 235 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 METP08581 1390 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 CARMIL3Q8ND23 1372 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 TTLL1O95922 423 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 NSFP46459 744 aaKnown RBP18.79■□□□□ 0.6
PTPRF-209ENST00000438120 KIF22Q14807 665 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 TRIML1Q8N9V2 468 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 NRBP1Q9UHY1 535 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 SEMA3EO15041 775 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 DIXDC1Q155Q3 683 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 MIGA2Q7L4E1 593 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 CCDC170Q8IYT3 715 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 TUBGCP2Q9BSJ2 902 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 ZNF148Q9UQR1 794 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 THAP12O43422 761 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 CIAO1O76071 339 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 FMNL1O95466 1100 aaPredicted RBP18.79■□□□□ 0.6
PTPRF-209ENST00000438120 SCYL1Q96KG9 808 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 PCDHB4Q9Y5E5 795 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 USP17L8P0C7I0 530 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 GNGT1P63211 74 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 MKRN3Q13064 507 aaKnown RBP18.79■□□□□ 0.6
PTPRF-209ENST00000438120 FAM160B1Q5W0V3 765 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 MAD1L1Q9Y6D9 718 aa18.79■□□□□ 0.6
PTPRF-209ENST00000438120 NR2F2P24468 414 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 SNAP25P60880 206 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 BFSP1Q12934 665 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 NR5A1Q13285 461 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 RPS6KA2Q15349 733 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 TBCKQ8TEA7 893 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 KDM5AP29375 1690 aaKnown RBP18.78■□□□□ 0.6
PTPRF-209ENST00000438120 IL6STP40189 918 aaPredicted RBP18.78■□□□□ 0.6
PTPRF-209ENST00000438120 SARNPP82979 210 aaKnown RBP18.78■□□□□ 0.6
PTPRF-209ENST00000438120 SATB1Q01826 763 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 METTL14Q9HCE5 456 aaKnown RBP18.78■□□□□ 0.6
PTPRF-209ENST00000438120 EPN1Q9Y6I3 576 aaPredicted RBP18.78■□□□□ 0.6
PTPRF-209ENST00000438120 DISP1Q96F81 1524 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 RBM6P78332 1123 aaKnown RBP18.78■□□□□ 0.6
PTPRF-209ENST00000438120 GRK7Q8WTQ7 553 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 TTC19Q6DKK2 380 aaPredicted RBP18.78■□□□□ 0.6
PTPRF-209ENST00000438120 USP17L2Q6R6M4 530 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 LEMD3Q9Y2U8 911 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 ERBB4Q15303 1308 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 FAM135BQ49AJ0 1406 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 YEATS2Q9ULM3 1422 aa18.78■□□□□ 0.6
PTPRF-209ENST00000438120 RNF40O75150 1001 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 ADD2P35612 726 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 PHLDB2Q86SQ0 1253 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 DCLK2Q8N568 766 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 ZNF215Q9UL58 517 aaPredicted RBP18.77■□□□□ 0.6
PTPRF-209ENST00000438120 H7C0C1 242 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 INO80B-WBP1J3KQ70 363 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 PHBP35232 272 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 ATP5OP48047 213 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 NSUN7Q8NE18 718 aaKnown RBP18.77■□□□□ 0.6
PTPRF-209ENST00000438120 ZNF526Q8TF50 670 aaPredicted RBP18.77■□□□□ 0.6
PTPRF-209ENST00000438120 INO80BQ9C086 356 aaPredicted RBP18.77■□□□□ 0.6
PTPRF-209ENST00000438120 SRP68Q9UHB9 627 aaKnown RBP18.77■□□□□ 0.6
PTPRF-209ENST00000438120 MAGED2Q9UNF1 606 aaPredicted RBP18.77■□□□□ 0.6
PTPRF-209ENST00000438120 LRRN2O75325 713 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 PPP2R5AQ15172 486 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 POTEDQ86YR6 584 aa18.77■□□□□ 0.6
PTPRF-209ENST00000438120 TACO1Q9BSH4 297 aaKnown RBP18.77■□□□□ 0.6
PTPRF-209ENST00000438120 UBN2Q6ZU65 1347 aa18.77■□□□□ 0.59
PTPRF-209ENST00000438120 LMNTD2Q8IXW0 634 aa18.77■□□□□ 0.59
PTPRF-209ENST00000438120 BAIAP2L1Q9UHR4 511 aa18.77■□□□□ 0.59
PTPRF-209ENST00000438120 H0YCG3 227 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 ATF2P15336 505 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 FOSP01100 380 aaPredicted RBP18.76■□□□□ 0.59
PTPRF-209ENST00000438120 SLC39A14Q15043 492 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 UBE2SQ16763 222 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 ASPRV1Q53RT3 343 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 NUB1Q9Y5A7 615 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 ARHGAP42A6NI28 874 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 RNF8O76064 485 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 CD2BP2O95400 341 aaKnown RBP18.76■□□□□ 0.59
PTPRF-209ENST00000438120 DPCR1Q3MIW9 517 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 SH2D4BQ5SQS7 431 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 OSBP2Q969R2 916 aa18.76■□□□□ 0.59
PTPRF-209ENST00000438120 MYCP01106 439 aaPredicted RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms