RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ZNF713Q8N859 430 aaPredicted RBP12.62□□□□□ -0.39
USP4-205ENST00000431357 NEK11Q8NG66 645 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 FAM71BQ8TC56 605 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 CALML4Q96GE6 196 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 CNOT6LQ96LI5 555 aaKnown RBP12.62□□□□□ -0.39
USP4-205ENST00000431357 MED4Q9NPJ6 270 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 SMCO2A6NFE2 343 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 FGFR1OPO95684 399 aaKnown RBP12.61□□□□□ -0.39
USP4-205ENST00000431357 RASA1P20936 1047 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 ASIC1P78348 528 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 TXNRD1Q16881 649 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 ANKRD40Q6AI12 368 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 IQCEQ6IPM2 695 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 NOA1Q8NC60 698 aaKnown RBP12.61□□□□□ -0.39
USP4-205ENST00000431357 GOLGA5Q8TBA6 731 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 CNKSR2Q8WXI2 1034 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 RRP36Q96EU6 259 aaKnown RBP12.61□□□□□ -0.39
USP4-205ENST00000431357 PLIN2Q99541 437 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 NOC4LQ9BVI4 516 aaKnown RBP12.61□□□□□ -0.39
USP4-205ENST00000431357 NHEJ1Q9H9Q4 299 aaPredicted RBP12.61□□□□□ -0.39
USP4-205ENST00000431357 STX8Q9UNK0 236 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 ABCB11O95342 1321 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 ESYT2A0FGR8 921 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 CCNT1O60563 726 aaKnown RBP12.61□□□□□ -0.39
USP4-205ENST00000431357 PSEN1P49768 467 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 LETM2Q2VYF4 491 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 C15orf52Q6ZUT6 534 aaKnown RBP12.61□□□□□ -0.39
USP4-205ENST00000431357 ZNF804AQ7Z570 1209 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 NEDD1Q8NHV4 660 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 TGFBRAP1Q8WUH2 860 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 PCMTD1Q96MG8 357 aaPredicted RBP12.61□□□□□ -0.39
USP4-205ENST00000431357 VPS18Q9P253 973 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 TRIM10Q9UDY6 481 aa12.61□□□□□ -0.39
USP4-205ENST00000431357 SEC63Q9UGP8 760 aaKnown RBP12.61□□□□□ -0.39
USP4-205ENST00000431357 PVALEFA0A1B0GWK0 134 aa12.6□□□□□ -0.39
USP4-205ENST00000431357 ATP1A1P05023 1023 aaKnown RBP12.6□□□□□ -0.39
USP4-205ENST00000431357 HNRNPH3P31942 346 aaKnown RBP12.6□□□□□ -0.39
USP4-205ENST00000431357 SLC4A8Q2Y0W8 1093 aa12.6□□□□□ -0.39
USP4-205ENST00000431357 C16orf86Q6ZW13 317 aa12.6□□□□□ -0.39
USP4-205ENST00000431357 PURBQ96QR8 312 aaKnown RBP12.6□□□□□ -0.39
USP4-205ENST00000431357 AGPAT5Q9NUQ2 364 aa12.6□□□□□ -0.39
USP4-205ENST00000431357 STK17AQ9UEE5 414 aa12.6□□□□□ -0.39
USP4-205ENST00000431357 NAV1Q8NEY1 1877 aa12.6□□□□□ -0.39
USP4-205ENST00000431357 RASSF10A6NK89 507 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 NUTM2BA6NNL0 878 aaPredicted RBP12.59□□□□□ -0.39
USP4-205ENST00000431357 NUTM2EB1AL46 878 aaPredicted RBP12.59□□□□□ -0.39
USP4-205ENST00000431357 USO1O60763 962 aaKnown RBP12.59□□□□□ -0.39
USP4-205ENST00000431357 PLCG2P16885 1265 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 ACTN2P35609 894 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 LMAN1P49257 510 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 VAV2P52735 878 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 KIF5AQ12840 1032 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 STK4Q13043 487 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 SPA17Q15506 151 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 ZSCAN26Q16670 478 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 CENPPQ6IPU0 288 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 SV2BQ7L1I2 683 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 LRRC15Q8TF66 581 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 LRRC27Q9C0I9 530 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 ANKIB1Q9P2G1 1089 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 JAG2Q9Y219 1238 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 TFRCP02786 760 aaKnown RBP12.59□□□□□ -0.39
USP4-205ENST00000431357 CDK8P49336 464 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 GRAPQ13588 217 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 MIIPQ5JXC2 388 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 CCDC70Q6NSX1 233 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 FOXR2Q6PJQ5 311 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 FNBP4Q8N3X1 1017 aaPredicted RBP12.59□□□□□ -0.39
USP4-205ENST00000431357 GRAPLQ8TC17 118 aaPredicted RBP12.59□□□□□ -0.39
USP4-205ENST00000431357 RUBCNQ92622 972 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 CCDC42Q96M95 316 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 MMS19Q96T76 1030 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 EYA3Q99504 573 aa12.59□□□□□ -0.39
USP4-205ENST00000431357 SRP68Q9UHB9 627 aaKnown RBP12.59□□□□□ -0.39
USP4-205ENST00000431357 ENC1O14682 589 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 TECP42680 631 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 AARSP49588 968 aaKnown RBP eCLIP12.58□□□□□ -0.4
USP4-205ENST00000431357 TMEM266Q2M3C6 531 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 LEKR1Q6ZMV7 388 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 UNC13DQ70J99 1090 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 MAPKAPK5Q8IW41 473 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 TRIM58Q8NG06 486 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 CCDC102AQ96A19 550 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 RTFDC1Q9BY42 306 aaPredicted RBP12.58□□□□□ -0.4
USP4-205ENST00000431357 RAB34Q9BZG1 259 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 MYH1P12882 1939 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 TACC1O75410 805 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 RPS6KA5O75582 802 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 IVLP07476 585 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 GOLGA8HP0CJ92 632 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 PRLRP16471 622 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 NOVP48745 357 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 FXR2P51116 673 aaKnown RBP eCLIP12.58□□□□□ -0.4
USP4-205ENST00000431357 DIXDC1Q155Q3 683 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 VWA3BQ502W6 1294 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 CCDC84Q86UT8 332 aaPredicted RBP12.58□□□□□ -0.4
USP4-205ENST00000431357 SLF2Q8IX21 1173 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 REXO1Q8N1G1 1221 aaKnown RBP12.58□□□□□ -0.4
USP4-205ENST00000431357 SLC44A5Q8NCS7 719 aa12.58□□□□□ -0.4
USP4-205ENST00000431357 CAGE1Q8TC20 777 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms