RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 WDR59Q6PJI9 974 aa18.37■□□□□ 0.53
HOXD3-201ENST00000249440 SLF2Q8IX21 1173 aa18.37■□□□□ 0.53
HOXD3-201ENST00000249440 RPGRQ92834 1020 aaKnown RBP18.37■□□□□ 0.53
HOXD3-201ENST00000249440 ZNHIT6Q9NWK9 470 aaKnown RBP18.37■□□□□ 0.53
HOXD3-201ENST00000249440 PSMD14O00487 310 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 MAP2K7O14733 419 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 GPSM2P81274 684 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 AMPD2Q01433 879 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 TBC1D8BQ0IIM8 1120 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 STK4Q13043 487 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 MEA1Q16626 185 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 ANKRD40Q6AI12 368 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 CNNM4Q6P4Q7 775 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 ZNF662Q6ZS27 426 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 REXO1Q8N1G1 1221 aaKnown RBP18.36■□□□□ 0.53
HOXD3-201ENST00000249440 TBCKQ8TEA7 893 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 CEP95Q96GE4 821 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 VAT1LQ9HCJ6 419 aa18.36■□□□□ 0.53
HOXD3-201ENST00000249440 ESYT2A0FGR8 921 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 hCG_1984214I3L0E3 225 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 UFL1O94874 794 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 IL1R1P14778 569 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 ATP2B4P23634 1241 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 BEND6Q5SZJ8 279 aaPredicted RBP18.35■□□□□ 0.53
HOXD3-201ENST00000249440 ZNF713Q8N859 430 aaPredicted RBP18.35■□□□□ 0.53
HOXD3-201ENST00000249440 CNOT6LQ96LI5 555 aaKnown RBP18.35■□□□□ 0.53
HOXD3-201ENST00000249440 PIGSQ96S52 555 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 TTYH3Q9C0H2 523 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 CYLC1P35663 651 aaPredicted RBP18.35■□□□□ 0.53
HOXD3-201ENST00000249440 COBLL1Q53SF7 1204 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 CCDC122Q5T0U0 273 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 EHBP1Q8NDI1 1231 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 FAM163AQ96GL9 167 aaPredicted RBP18.35■□□□□ 0.53
HOXD3-201ENST00000249440 PNKPQ96T60 521 aa18.35■□□□□ 0.53
HOXD3-201ENST00000249440 IPO7O95373 1038 aaKnown RBP18.34■□□□□ 0.53
HOXD3-201ENST00000249440 MTIF2P46199 727 aaKnown RBP18.34■□□□□ 0.53
HOXD3-201ENST00000249440 ZBED6P86452 979 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 EN1Q05925 392 aaPredicted RBP18.34■□□□□ 0.53
HOXD3-201ENST00000249440 GPS2Q13227 327 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 HDXQ7Z353 690 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 DEFB132Q7Z7B7 95 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 NOC4LQ9BVI4 516 aaKnown RBP18.34■□□□□ 0.53
HOXD3-201ENST00000249440 GBP3Q9H0R5 595 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 BIN2Q9UBW5 565 aaPredicted RBP18.34■□□□□ 0.53
HOXD3-201ENST00000249440 UTRNP46939 3433 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 KRT86O43790 486 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 NOVP48745 357 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 CCDC170Q8IYT3 715 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 RIOX1Q9H6W3 641 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 AGPAT5Q9NUQ2 364 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.34■□□□□ 0.53
HOXD3-201ENST00000249440 TRIM10Q9UDY6 481 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 GGA1Q9UJY5 639 aa18.34■□□□□ 0.53
HOXD3-201ENST00000249440 ERICH4A6NGS2 130 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 RHOXF2BP0C7M4 288 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 FCER1AP12319 257 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 RHBDL3P58872 404 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 HERVK_113P62684 666 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 MFSD14BQ5SR56 506 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 SV2BQ7L1I2 683 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 TRAPPC11Q7Z392 1133 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 KIAA1328Q86T90 577 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 ZSCAN29Q8IWY8 852 aaPredicted RBP18.33■□□□□ 0.53
HOXD3-201ENST00000249440 PCMTD1Q96MG8 357 aaPredicted RBP18.33■□□□□ 0.53
HOXD3-201ENST00000249440 RHOXF2Q9BQY4 288 aa18.33■□□□□ 0.53
HOXD3-201ENST00000249440 MMTAG2Q9BU76 263 aaKnown RBP18.33■□□□□ 0.53
HOXD3-201ENST00000249440 TFRCP02786 760 aaKnown RBP18.33■□□□□ 0.52
HOXD3-201ENST00000249440 TXKP42681 527 aa18.33■□□□□ 0.52
HOXD3-201ENST00000249440 EZH2Q15910 746 aaKnown RBP18.33■□□□□ 0.52
HOXD3-201ENST00000249440 FIGNQ5HY92 759 aa18.33■□□□□ 0.52
HOXD3-201ENST00000249440 FKBP15Q5T1M5 1219 aa18.33■□□□□ 0.52
HOXD3-201ENST00000249440 PRR5LQ6MZQ0 368 aa18.33■□□□□ 0.52
HOXD3-201ENST00000249440 POTEDQ86YR6 584 aa18.33■□□□□ 0.52
HOXD3-201ENST00000249440 MSL3Q8N5Y2 521 aaKnown RBP18.33■□□□□ 0.52
HOXD3-201ENST00000249440 TBC1D22AQ8WUA7 517 aa18.33■□□□□ 0.52
HOXD3-201ENST00000249440 IQCDQ96DY2 449 aa18.33■□□□□ 0.52
HOXD3-201ENST00000249440 EEF2KMTQ96G04 330 aa18.33■□□□□ 0.52
HOXD3-201ENST00000249440 ZCCHC17Q9NP64 241 aaKnown RBP18.33■□□□□ 0.52
HOXD3-201ENST00000249440 USP17L5A8MUK1 530 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 ERGIC2Q96RQ1 377 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 UBA5Q9GZZ9 404 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 NHEJ1Q9H9Q4 299 aaPredicted RBP18.32■□□□□ 0.52
HOXD3-201ENST00000249440 STK17AQ9UEE5 414 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 LRWD1Q9UFC0 647 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 SAR1BQ9Y6B6 198 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 UBR3Q6ZT12 1888 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 A0A1W2PQJ5 194 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 EIF3CLB5ME19 914 aaKnown RBP18.32■□□□□ 0.52
HOXD3-201ENST00000249440 CALCRLQ16602 461 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 TMEM266Q2M3C6 531 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 MIIPQ5JXC2 388 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 NCAPH2Q6IBW4 605 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 MTMR9Q96QG7 549 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 EIF3CQ99613 913 aaKnown RBP18.32■□□□□ 0.52
HOXD3-201ENST00000249440 RAB34Q9BZG1 259 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 ABCB6Q9NP58 842 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 L1RE1Q9UN81 338 aa18.32■□□□□ 0.52
HOXD3-201ENST00000249440 GAKO14976 1311 aa18.31■□□□□ 0.52
HOXD3-201ENST00000249440 RASSF10A6NK89 507 aa18.31■□□□□ 0.52
HOXD3-201ENST00000249440 EIF3JO75822 258 aaKnown RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms