RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 SMARCA5O60264 1052 aaPredicted RBP12.33□□□□□ -0.44
SS18-221ENST00000582448 IGFBP4P22692 258 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 CTGFP29279 349 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 INPP5BP32019 993 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 GRK4P32298 578 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 PRMT2P55345 433 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 TCP10Q12799 353 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 PPIL2Q13356 520 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 LRRC24Q50LG9 513 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 DCAF15Q66K64 600 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 C17orf99Q6UX52 265 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 CLASRPQ8N2M8 674 aaKnown RBP12.33□□□□□ -0.44
SS18-221ENST00000582448 FAM200AQ8TCP9 573 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 TBC1D22AQ8WUA7 517 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 HOOK2Q96ED9 719 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 ZNF341Q9BYN7 854 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 RNF208Q9H0X6 261 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 SRRDQ9UH36 339 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 ZMIZ1Q9ULJ6 1067 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 NOVA2Q9UNW9 492 aaKnown RBP12.33□□□□□ -0.44
SS18-221ENST00000582448 NOP58Q9Y2X3 529 aaKnown RBP12.33□□□□□ -0.44
SS18-221ENST00000582448 RIPOR2Q9Y4F9 1068 aa12.33□□□□□ -0.44
SS18-221ENST00000582448 CDC45O75419 566 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 CCL5P13501 91 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 MX1P20591 662 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 HDLBPQ00341 1268 aaKnown RBP12.32□□□□□ -0.44
SS18-221ENST00000582448 TTC22Q5TAA0 569 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 GOLGA6L1Q8N7Z2 621 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 SHISA4Q96DD7 197 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 SUSD3Q96L08 255 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 NEUROD4Q9HD90 331 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 ZCCHC17Q9NP64 241 aaKnown RBP12.32□□□□□ -0.44
SS18-221ENST00000582448 MARK1Q9P0L2 795 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 DNMT3AQ9Y6K1 912 aaPredicted RBP12.32□□□□□ -0.44
SS18-221ENST00000582448 MROH5Q6ZUA9 1318 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 CNTNAP5Q8WYK1 1306 aa12.32□□□□□ -0.44
SS18-221ENST00000582448 ARAFP10398 606 aa12.31□□□□□ -0.44
SS18-221ENST00000582448 WEE1P30291 646 aa12.31□□□□□ -0.44
SS18-221ENST00000582448 PPATQ06203 517 aa12.31□□□□□ -0.44
SS18-221ENST00000582448 SFSWAPQ12872 951 aaKnown RBP12.31□□□□□ -0.44
SS18-221ENST00000582448 APOBEC3HQ6NTF7 200 aaKnown RBP12.31□□□□□ -0.44
SS18-221ENST00000582448 FAM83AQ86UY5 434 aa12.31□□□□□ -0.44
SS18-221ENST00000582448 EDARADDQ8WWZ3 215 aa12.31□□□□□ -0.44
SS18-221ENST00000582448 ZDHHC15Q96MV8 337 aa12.31□□□□□ -0.44
SS18-221ENST00000582448 HTATIP2Q9BUP3 242 aa12.31□□□□□ -0.44
SS18-221ENST00000582448 MYPNQ86TC9 1320 aa12.31□□□□□ -0.44
SS18-221ENST00000582448 RBBP6Q7Z6E9 1792 aaKnown RBP12.3□□□□□ -0.44
SS18-221ENST00000582448 OTOFQ9HC10 1997 aa12.3□□□□□ -0.44
SS18-221ENST00000582448 IFIT2P09913 472 aaKnown RBP12.3□□□□□ -0.44
SS18-221ENST00000582448 PDE1AP54750 535 aa12.3□□□□□ -0.44
SS18-221ENST00000582448 UBXN2AP68543 259 aa12.3□□□□□ -0.44
SS18-221ENST00000582448 RABL6Q3YEC7 729 aaPredicted RBP12.3□□□□□ -0.44
SS18-221ENST00000582448 SLCO4C1Q6ZQN7 724 aa12.3□□□□□ -0.44
SS18-221ENST00000582448 ANKRD23Q86SG2 305 aa12.3□□□□□ -0.44
SS18-221ENST00000582448 SLC17A8Q8NDX2 589 aa12.3□□□□□ -0.44
SS18-221ENST00000582448 KLHDC4Q8TBB5 520 aa12.3□□□□□ -0.44
SS18-221ENST00000582448 KAZALD1Q96I82 304 aa12.3□□□□□ -0.44
SS18-221ENST00000582448 ZSWIM8A7E2V4 1837 aa12.3□□□□□ -0.44
SS18-221ENST00000582448 ERC2O15083 957 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 PDE8BO95263 885 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 GJB1P08034 283 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 IFIT1P09914 478 aaKnown RBP12.29□□□□□ -0.44
SS18-221ENST00000582448 CYP2C8P10632 490 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 IRS1P35568 1242 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 GJA8P48165 433 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 PRKCZQ05513 592 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 LAMC2Q13753 1193 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 SCARF2Q96GP6 870 aaPredicted RBP12.29□□□□□ -0.44
SS18-221ENST00000582448 MRIQ9BWK5 157 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 IL1RAPL2Q9NP60 686 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 STAP2Q9UGK3 403 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 GABRQQ9UN88 632 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 NR2E3Q9Y5X4 410 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 MAST3O60307 1309 aa12.29□□□□□ -0.44
SS18-221ENST00000582448 DLL1O00548 723 aa12.28□□□□□ -0.44
SS18-221ENST00000582448 TFRCP02786 760 aaKnown RBP12.28□□□□□ -0.44
SS18-221ENST00000582448 FCGRTP55899 365 aa12.28□□□□□ -0.44
SS18-221ENST00000582448 FKBP1CQ5VVH2 108 aa12.28□□□□□ -0.44
SS18-221ENST00000582448 HHIPL2Q6UWX4 724 aa12.28□□□□□ -0.44
SS18-221ENST00000582448 STK32AQ8WU08 396 aa12.28□□□□□ -0.44
SS18-221ENST00000582448 FAM151AQ8WW52 585 aa12.28□□□□□ -0.44
SS18-221ENST00000582448 IPO9Q96P70 1041 aaKnown RBP12.28□□□□□ -0.44
SS18-221ENST00000582448 COPRSQ9NQ92 184 aa12.28□□□□□ -0.44
SS18-221ENST00000582448 TTC41PQ6P2S7 1318 aa12.28□□□□□ -0.44
SS18-221ENST00000582448 FARP2O94887 1054 aaPredicted RBP12.27□□□□□ -0.45
SS18-221ENST00000582448 EPXP11678 715 aa12.27□□□□□ -0.45
SS18-221ENST00000582448 MFAP1P55081 439 aaKnown RBP12.27□□□□□ -0.45
SS18-221ENST00000582448 PCBP4P57723 403 aaKnown RBP12.27□□□□□ -0.45
SS18-221ENST00000582448 SNRPNP63162 240 aaKnown RBP12.27□□□□□ -0.45
SS18-221ENST00000582448 ELOAQ14241 798 aaKnown RBP12.27□□□□□ -0.45
SS18-221ENST00000582448 GADL1Q6ZQY3 521 aa12.27□□□□□ -0.45
SS18-221ENST00000582448 ERICH6Q7L0X2 663 aa12.27□□□□□ -0.45
SS18-221ENST00000582448 FCHSD1Q86WN1 690 aa12.27□□□□□ -0.45
SS18-221ENST00000582448 OTUD7AQ8TE49 926 aaPredicted RBP12.27□□□□□ -0.45
SS18-221ENST00000582448 U2AF1L4Q8WU68 220 aaKnown RBP12.27□□□□□ -0.45
SS18-221ENST00000582448 CEP63Q96MT8 703 aa12.27□□□□□ -0.45
SS18-221ENST00000582448 PARK7Q99497 189 aaKnown RBP12.27□□□□□ -0.45
SS18-221ENST00000582448 SIL1Q9H173 461 aa12.27□□□□□ -0.45
SS18-221ENST00000582448 USP40Q9NVE5 1235 aa12.27□□□□□ -0.45
SS18-221ENST00000582448 PA2G4Q9UQ80 394 aaKnown RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms