RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 TMEM40Q8WWA1 233 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 EZH1Q92800 747 aaPredicted RBP7.98□□□□□ -1.13
LRRC28-220ENST00000561253 TP53INP1Q96A56 240 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 ANTXR1Q9H6X2 564 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 PRKRIP1Q9H875 184 aaPredicted RBP7.98□□□□□ -1.13
LRRC28-220ENST00000561253 LGR6Q9HBX8 967 aa7.98□□□□□ -1.13
LRRC28-220ENST00000561253 TRPC5Q9UL62 973 aaPredicted RBP7.98□□□□□ -1.13
LRRC28-220ENST00000561253 FAM208AQ9UK61 1670 aaKnown RBP7.98□□□□□ -1.13
LRRC28-220ENST00000561253 RGPD5Q99666 1765 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 MAP2P11137 1827 aaKnown RBP7.97□□□□□ -1.13
LRRC28-220ENST00000561253 MEIS3P2A8K0S8 358 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 UPK3BL1B0FP48 263 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 CHURC1-FNTBB4DL54 471 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 UPK3BL2E5RIL1 263 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 IL13P35225 146 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 CAP2P40123 477 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 AMPHP49418 695 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 GSK3AP49840 483 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 EIF4A2Q14240 407 aaKnown RBP7.97□□□□□ -1.13
LRRC28-220ENST00000561253 RALBP1Q15311 655 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 NFKBIBQ15653 356 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 TNNI3KQ59H18 835 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 ARSHQ5FYA8 562 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 NBPF6Q5VWK0 638 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 PAOXQ6QHF9 649 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 BEND4Q6ZU67 534 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 NBPF4Q96M43 638 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 SSBP4Q9BWG4 385 aaPredicted RBP7.97□□□□□ -1.13
LRRC28-220ENST00000561253 R3HCC1Q9Y3T6 440 aaKnown RBP7.97□□□□□ -1.13
LRRC28-220ENST00000561253 THSD7AQ9UPZ6 1657 aa7.97□□□□□ -1.13
LRRC28-220ENST00000561253 RGS12O14924 1447 aa7.96□□□□□ -1.13
LRRC28-220ENST00000561253 RGPD1P0DJD0 1748 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 DNAJA2O60884 412 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 LRIG2O94898 1065 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 RAG1P15918 1043 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 RBM6P78332 1123 aaKnown RBP7.96□□□□□ -1.14
LRRC28-220ENST00000561253 SLBPQ14493 270 aaKnown RBP eCLIP7.96□□□□□ -1.14
LRRC28-220ENST00000561253 PRAMEF13Q5VWM6 474 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 ARMCX6Q7L4S7 300 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 NLRC3Q7RTR2 1065 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 CKAP2LQ8IYA6 745 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 PHACTR4Q8IZ21 702 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 ATG4CQ96DT6 458 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 DNAJC2Q99543 621 aaKnown RBP7.96□□□□□ -1.14
LRRC28-220ENST00000561253 TM9SF2Q99805 663 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 DPH2Q9BQC3 489 aaPredicted RBP7.96□□□□□ -1.14
LRRC28-220ENST00000561253 FOXQ1Q9C009 403 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 PRKAG3Q9UGI9 489 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 IGSF1Q8N6C5 1336 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 KDRP35968 1356 aa7.96□□□□□ -1.14
LRRC28-220ENST00000561253 CST3P01034 146 aaPredicted RBP7.95□□□□□ -1.14
LRRC28-220ENST00000561253 PPP2R5EQ16537 467 aa7.95□□□□□ -1.14
LRRC28-220ENST00000561253 PLA2G4EQ3MJ16 856 aa7.95□□□□□ -1.14
LRRC28-220ENST00000561253 CDCP2Q5VXM1 449 aa7.95□□□□□ -1.14
LRRC28-220ENST00000561253 CLEC10AQ8IUN9 316 aa7.95□□□□□ -1.14
LRRC28-220ENST00000561253 SLFN12Q8IYM2 578 aa7.95□□□□□ -1.14
LRRC28-220ENST00000561253 TCP11L2Q8N4U5 519 aa7.95□□□□□ -1.14
LRRC28-220ENST00000561253 MFSD2AQ8NA29 543 aa7.95□□□□□ -1.14
LRRC28-220ENST00000561253 CNNM2Q9H8M5 875 aa7.95□□□□□ -1.14
LRRC28-220ENST00000561253 THRAP3Q9Y2W1 955 aaKnown RBP7.95□□□□□ -1.14
LRRC28-220ENST00000561253 MEGF6O75095 1541 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 SMAD7O15105 426 aaKnown RBP7.94□□□□□ -1.14
LRRC28-220ENST00000561253 NME1P15531 152 aaKnown RBP7.94□□□□□ -1.14
LRRC28-220ENST00000561253 RBL2Q08999 1139 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 SOGA3Q5TF21 947 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 RUFY4Q6ZNE9 571 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 ANKS3Q6ZW76 656 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 FAM169BQ8N8A8 192 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 XAGE3Q8WTP9 111 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 FAM83CQ9BQN1 747 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 STOML1Q9UBI4 398 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 RAXQ9Y2V3 346 aa7.94□□□□□ -1.14
LRRC28-220ENST00000561253 MYBBP1AQ9BQG0 1328 aaKnown RBP7.94□□□□□ -1.14
LRRC28-220ENST00000561253 SRCAPQ6ZRS2 3230 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 PPM1GO15355 546 aaPredicted RBP7.93□□□□□ -1.14
LRRC28-220ENST00000561253 DYNC1LI2O43237 492 aaPredicted RBP7.93□□□□□ -1.14
LRRC28-220ENST00000561253 GUCY2CP25092 1073 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 EVA1CP58658 441 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 TOM1L2Q6ZVM7 507 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 TAB3Q8N5C8 712 aaPredicted RBP7.93□□□□□ -1.14
LRRC28-220ENST00000561253 GIMAP7Q8NHV1 300 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 CYB5D2Q8WUJ1 264 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 LTV1Q96GA3 475 aaPredicted RBP7.93□□□□□ -1.14
LRRC28-220ENST00000561253 CCDC74BQ96LY2 380 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 TRIM55Q9BYV6 548 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 ACTR10Q9NZ32 417 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 PLEKHG2Q9H7P9 1386 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 OVOS2A0A0G2JMS6 1433 aa7.93□□□□□ -1.14
LRRC28-220ENST00000561253 RGPD2P0DJD1 1756 aa7.92□□□□□ -1.14
LRRC28-220ENST00000561253 TNFRSF10CO14798 259 aa7.92□□□□□ -1.14
LRRC28-220ENST00000561253 CHMP4BP1P59074 171 aa7.92□□□□□ -1.14
LRRC28-220ENST00000561253 CDK5R2Q13319 367 aa7.92□□□□□ -1.14
LRRC28-220ENST00000561253 CNGB1Q14028 1251 aaPredicted RBP7.92□□□□□ -1.14
LRRC28-220ENST00000561253 CCDC184Q52MB2 194 aa7.92□□□□□ -1.14
LRRC28-220ENST00000561253 INTS3Q68E01 1043 aaKnown RBP7.92□□□□□ -1.14
LRRC28-220ENST00000561253 USHBP1Q8N6Y0 703 aa7.92□□□□□ -1.14
LRRC28-220ENST00000561253 C19orf47Q8N9M1 422 aaKnown RBP7.92□□□□□ -1.14
LRRC28-220ENST00000561253 HNRNPLLQ8WVV9 542 aaKnown RBP7.92□□□□□ -1.14
LRRC28-220ENST00000561253 KIF2CQ99661 725 aa7.92□□□□□ -1.14
LRRC28-220ENST00000561253 TPSG1Q9NRR2 321 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms