RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TCEAL1Q15170 157 aa7.98□□□□□ -1.13
VPS13C-208ENST00000559119 ZYXQ15942 572 aaKnown RBP7.98□□□□□ -1.13
VPS13C-208ENST00000559119 BICRALQ6AI39 1079 aa7.98□□□□□ -1.13
VPS13C-208ENST00000559119 RBBP8NLQ8NC74 664 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-208ENST00000559119 FEZF2Q8TBJ5 459 aa7.98□□□□□ -1.13
VPS13C-208ENST00000559119 ZNF451Q9Y4E5 1061 aa7.98□□□□□ -1.13
VPS13C-208ENST00000559119 TBC1D8O95759 1140 aa7.97□□□□□ -1.13
VPS13C-208ENST00000559119 POU4F1Q01851 419 aa7.97□□□□□ -1.13
VPS13C-208ENST00000559119 PAQR3Q6TCH7 311 aa7.97□□□□□ -1.13
VPS13C-208ENST00000559119 RUFY4Q6ZNE9 571 aa7.97□□□□□ -1.13
VPS13C-208ENST00000559119 NLGN1Q8N2Q7 840 aa7.97□□□□□ -1.13
VPS13C-208ENST00000559119 LINC01356Q8N9X3 169 aa7.97□□□□□ -1.13
VPS13C-208ENST00000559119 RNF34Q969K3 372 aa7.97□□□□□ -1.13
VPS13C-208ENST00000559119 NOL6Q9H6R4 1146 aaKnown RBP7.97□□□□□ -1.13
VPS13C-208ENST00000559119 CYBBP04839 570 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 CD3EP07766 207 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 DBHP09172 617 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 TARBP2Q15633 366 aaKnown RBP7.96□□□□□ -1.14
VPS13C-208ENST00000559119 LCE5AQ5TCM9 118 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 ERICH6BQ5W0A0 696 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 ZDHHC14Q8IZN3 488 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 ZDHHC15Q96MV8 337 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 PTCHD1Q96NR3 888 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 FCRL3Q96P31 734 aaPredicted RBP7.96□□□□□ -1.14
VPS13C-208ENST00000559119 CRBNQ96SW2 442 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 PDLIM7Q9NR12 457 aa7.96□□□□□ -1.14
VPS13C-208ENST00000559119 ZNF214Q9UL59 606 aaPredicted RBP7.96□□□□□ -1.14
VPS13C-208ENST00000559119 SRGAP3O43295 1099 aa7.95□□□□□ -1.14
VPS13C-208ENST00000559119 TMCO4Q5TGY1 634 aa7.95□□□□□ -1.14
VPS13C-208ENST00000559119 LSRQ86X29 649 aaPredicted RBP7.95□□□□□ -1.14
VPS13C-208ENST00000559119 CXorf38Q8TB03 319 aa7.95□□□□□ -1.14
VPS13C-208ENST00000559119 LUC7LQ9NQ29 371 aaKnown RBP7.95□□□□□ -1.14
VPS13C-208ENST00000559119 DBR1Q9UK59 544 aaKnown RBP7.95□□□□□ -1.14
VPS13C-208ENST00000559119 IRS2Q9Y4H2 1338 aa7.95□□□□□ -1.14
VPS13C-208ENST00000559119 A0A087WZG4 1122 aa7.94□□□□□ -1.14
VPS13C-208ENST00000559119 IFNGR1P15260 489 aa7.94□□□□□ -1.14
VPS13C-208ENST00000559119 TACR1P25103 407 aa7.94□□□□□ -1.14
VPS13C-208ENST00000559119 L1CAMP32004 1257 aa7.94□□□□□ -1.14
VPS13C-208ENST00000559119 LIMS1P48059 325 aa7.94□□□□□ -1.14
VPS13C-208ENST00000559119 CORO7P57737 925 aa7.94□□□□□ -1.14
VPS13C-208ENST00000559119 PPP2R5DQ14738 602 aa7.94□□□□□ -1.14
VPS13C-208ENST00000559119 SYT8Q8NBV8 401 aa7.94□□□□□ -1.14
VPS13C-208ENST00000559119 DIS3Q9Y2L1 958 aaKnown RBP7.94□□□□□ -1.14
VPS13C-208ENST00000559119 IGFBP6P24592 240 aaPredicted RBP7.93□□□□□ -1.14
VPS13C-208ENST00000559119 RACK1P63244 317 aaKnown RBP7.93□□□□□ -1.14
VPS13C-208ENST00000559119 COL9A2Q14055 689 aaPredicted RBP7.93□□□□□ -1.14
VPS13C-208ENST00000559119 CCDC81Q6ZN84 652 aa7.93□□□□□ -1.14
VPS13C-208ENST00000559119 DDX41Q9UJV9 622 aaKnown RBP7.93□□□□□ -1.14
VPS13C-208ENST00000559119 SLC12A7Q9Y666 1083 aa7.93□□□□□ -1.14
VPS13C-208ENST00000559119 F8W031 263 aaPredicted RBP7.92□□□□□ -1.14
VPS13C-208ENST00000559119 GNPTABQ3T906 1256 aa7.92□□□□□ -1.14
VPS13C-208ENST00000559119 NLGN2Q8NFZ4 835 aa7.92□□□□□ -1.14
VPS13C-208ENST00000559119 WHRNQ9P202 907 aa7.92□□□□□ -1.14
VPS13C-208ENST00000559119 FAN1Q9Y2M0 1017 aa7.92□□□□□ -1.14
VPS13C-208ENST00000559119 HCFC2Q9Y5Z7 792 aa7.92□□□□□ -1.14
VPS13C-208ENST00000559119 CBFA2T2O43439 604 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 PRR5P85299 388 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 CAP1Q01518 475 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 HEATR6Q6AI08 1181 aaKnown RBP7.91□□□□□ -1.14
VPS13C-208ENST00000559119 ZNF654Q8IZM8 581 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 ADCY4Q8NFM4 1077 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 HAUS7Q99871 368 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 KRTAP9-3Q9BYQ3 159 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 GBP3Q9H0R5 595 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 GINM1Q9NU53 330 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 LTBP3Q9NS15 1303 aa7.91□□□□□ -1.14
VPS13C-208ENST00000559119 ZC3H12DA2A288 527 aaKnown RBP7.9□□□□□ -1.14
VPS13C-208ENST00000559119 CELA3BP08861 270 aa7.9□□□□□ -1.14
VPS13C-208ENST00000559119 EIF6P56537 245 aaKnown RBP7.9□□□□□ -1.14
VPS13C-208ENST00000559119 FOXO4P98177 505 aa7.9□□□□□ -1.14
VPS13C-208ENST00000559119 PAK2Q13177 524 aa7.9□□□□□ -1.14
VPS13C-208ENST00000559119 EEF1DP3Q658K8 133 aa7.9□□□□□ -1.14
VPS13C-208ENST00000559119 RCSD1Q6JBY9 416 aa7.9□□□□□ -1.14
VPS13C-208ENST00000559119 ADAT2Q7Z6V5 191 aaKnown RBP7.9□□□□□ -1.14
VPS13C-208ENST00000559119 CABP7Q86V35 215 aa7.9□□□□□ -1.14
VPS13C-208ENST00000559119 TP53I13Q8NBR0 393 aaPredicted RBP7.9□□□□□ -1.14
VPS13C-208ENST00000559119 SPATA32Q96LK8 384 aa7.9□□□□□ -1.14
VPS13C-208ENST00000559119 PHAXQ9H814 394 aaKnown RBP7.9□□□□□ -1.14
VPS13C-208ENST00000559119 FFAR3O14843 346 aa7.89□□□□□ -1.15
VPS13C-208ENST00000559119 KCNC1P48547 511 aa7.89□□□□□ -1.15
VPS13C-208ENST00000559119 TEPSINQ96N21 525 aa7.89□□□□□ -1.15
VPS13C-208ENST00000559119 RNF38Q9H0F5 515 aa7.89□□□□□ -1.15
VPS13C-208ENST00000559119 ADAM7Q9H2U9 754 aa7.89□□□□□ -1.15
VPS13C-208ENST00000559119 SUSD2Q9UGT4 822 aa7.89□□□□□ -1.15
VPS13C-208ENST00000559119 EFR3BQ9Y2G0 817 aa7.89□□□□□ -1.15
VPS13C-208ENST00000559119 ZBTB7CA1YPR0 619 aa7.88□□□□□ -1.15
VPS13C-208ENST00000559119 SCAMP3O14828 347 aaKnown RBP7.88□□□□□ -1.15
VPS13C-208ENST00000559119 PPM1BO75688 479 aa7.88□□□□□ -1.15
VPS13C-208ENST00000559119 NCAM1P13591 858 aa7.88□□□□□ -1.15
VPS13C-208ENST00000559119 FBLN1P23142 703 aa7.88□□□□□ -1.15
VPS13C-208ENST00000559119 SLC7A5Q01650 507 aa7.88□□□□□ -1.15
VPS13C-208ENST00000559119 SKOR2Q2VWA4 1001 aaPredicted RBP7.88□□□□□ -1.15
VPS13C-208ENST00000559119 FRMD5Q7Z6J6 570 aa7.88□□□□□ -1.15
VPS13C-208ENST00000559119 ALG3Q92685 438 aa7.88□□□□□ -1.15
VPS13C-208ENST00000559119 PMF1-BGLAPU3KQ54 211 aa7.88□□□□□ -1.15
VPS13C-208ENST00000559119 STXBP3O00186 592 aa7.87□□□□□ -1.15
VPS13C-208ENST00000559119 AURKAO14965 403 aa7.87□□□□□ -1.15
VPS13C-208ENST00000559119 SEPHS1P49903 392 aa7.87□□□□□ -1.15
VPS13C-208ENST00000559119 SLURP1P55000 103 aa7.87□□□□□ -1.15
VPS13C-208ENST00000559119 DPY19L1Q2PZI1 675 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms