RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 IGDCC4Q8TDY8 1250 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 BRF1Q92994 677 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 MFRPQ9BY79 579 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 KRTAP3-3Q9BYR6 98 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 KRTAP3-2Q9BYR7 98 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 AGXT2Q9BYV1 514 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 PORCNQ9H237 461 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 ALDH8A1Q9H2A2 487 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 MROH8Q9H579 483 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 KIF3AQ9Y496 699 aa8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 FRMPD2Q68DX3 1309 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-222ENST00000515847 VWA5AO00534 786 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 EXOSC10Q01780 885 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 PRKCZQ05513 592 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 TROAPQ12815 778 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 PLS1Q14651 629 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 FBXO46Q6PJ61 603 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 MCF2L2Q86YR7 1114 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 CHST13Q8NET6 341 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 REPS2Q8NFH8 660 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 CCDC12Q8WUD4 166 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 RRP36Q96EU6 259 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 ZNF274Q96GC6 653 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 TBC1D32Q96NH3 1257 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 SPZ1Q9BXG8 430 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 UPF3BQ9BZI7 483 aaKnown RBP8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 SPATC1LQ9H0A9 340 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 GLT8D2Q9H1C3 349 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 SLC38A10Q9HBR0 1119 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 SENP2Q9HC62 589 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 GPCPD1Q9NPB8 672 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 SH2B1Q9NRF2 756 aaPredicted RBP8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 SRRDQ9UH36 339 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 GABRQQ9UN88 632 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 ADAMTS5Q9UNA0 930 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 PTCH2Q9Y6C5 1203 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 PFASO15067 1338 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 PLXNB2O15031 1838 aa8.98□□□□□ -0.97
LIMCH1-222ENST00000515847 PALM3A6NDB9 673 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 B4DLN1 442 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 KLRF2D3W0D1 207 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 STRNO43815 780 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 ICAM1P05362 532 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 XBP1P17861 261 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 STAT3P40763 770 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 NEK4P51957 841 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 MRPL12P52815 198 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 KCTD2Q14681 263 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 TMEM132BQ14DG7 1078 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 CDC37Q16543 378 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 WDR78Q5VTH9 848 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 SNRNP48Q6IEG0 339 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 TTBK2Q6IQ55 1244 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 PPP1R18Q6NYC8 613 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 RIOX2Q8IUF8 465 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 ABRAQ8N0Z2 381 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 FAM177A1Q8N128 213 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 SAMD3Q8N6K7 520 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 FANCBQ8NB91 859 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 WASF1Q92558 559 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 ZSCAN31Q96LW9 406 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 AMNQ9BXJ7 453 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 MOV10L1Q9BXT6 1211 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 LRRC2Q9BYS8 371 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 SLKQ9H2G2 1235 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 RANBP17Q9H2T7 1088 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 ACAD9Q9H845 621 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 GPHNQ9NQX3 736 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 ZNF214Q9UL59 606 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 CCPG1Q9ULG6 757 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 PRR12Q9ULL5 1215 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 PTPN22Q9Y2R2 807 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 ABCB11O95342 1321 aa8.97□□□□□ -0.97
LIMCH1-222ENST00000515847 ZBTB5O15062 677 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 GOLGA8HP0CJ92 632 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 FCER1AP12319 257 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 CPA1P15085 419 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 ERCC3P19447 782 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 SLC16A2P36021 539 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 RGS2P41220 211 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 FLT3LGP49771 235 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 EVCP57679 992 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 SNAP25P60880 206 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 TMTC3Q6ZXV5 915 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 GPR142Q7Z601 462 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 PLEKHH3Q7Z736 793 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 NCAPG2Q86XI2 1143 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 FBXO11Q86XK2 927 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 CCDC148Q8NFR7 591 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 ABHD8Q96I13 439 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 TCEANC2Q96MN5 208 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 NUDT12Q9BQG2 462 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 CPVLQ9H3G5 476 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 EHMT1Q9H9B1 1298 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 RAVER2Q9HCJ3 691 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 MAD2L2Q9UI95 211 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 HPS5Q9UPZ3 1129 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 MRPL11Q9Y3B7 192 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 ZNF236Q9UL36 1845 aa8.96□□□□□ -0.98
LIMCH1-222ENST00000515847 LOC102724159A0A0B4J2E5 919 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms