RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 FAM126AQ9BYI3 521 aaPredicted RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 UPF3AQ9H1J1 476 aaKnown RBP3.16□□□□□ -1.9
NEDD4-204ENST00000503468 GGA2Q9UJY4 613 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 SMC3Q9UQE7 1217 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 TNNQ9UQP3 1299 aa3.16□□□□□ -1.9
NEDD4-204ENST00000503468 ERICH4A6NGS2 130 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 FANCGO15287 622 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 POTEIP0CG38 1075 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 SKILP12757 684 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 CDC25AP30304 524 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 MAPK7Q13164 816 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 GRM1Q13255 1194 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 TMED1Q13445 227 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 SMC1AQ14683 1233 aaKnown RBP3.15□□□□□ -1.9
NEDD4-204ENST00000503468 TMEM119Q4V9L6 283 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 HDXQ7Z353 690 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 NSUN7Q8NE18 718 aaKnown RBP3.15□□□□□ -1.9
NEDD4-204ENST00000503468 GPATCH3Q96I76 525 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 ZNF341Q9BYN7 854 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 LNPKQ9C0E8 428 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 ADAM21Q9UKJ8 722 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 ZBTB1Q9Y2K1 713 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.15□□□□□ -1.93e-7■■■■■ 29.4
NEDD4-204ENST00000503468 GOLGA6L10A0A0M3HER8 536 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 GFPT2O94808 682 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 GNAI2P04899 355 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 IFI6P09912 130 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 GNAT2P19087 354 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 IFFO1Q0D2I5 559 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 PTP4A2Q12974 167 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 CAGE1Q8TC20 777 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 SYN2Q92777 582 aaPredicted RBP3.15□□□□□ -1.9
NEDD4-204ENST00000503468 ITFG2Q969R8 447 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 PRDM16Q9HAZ2 1276 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 GNL3LQ9NVN8 582 aaKnown RBP3.15□□□□□ -1.9
NEDD4-204ENST00000503468 CTDP1Q9Y5B0 961 aaPredicted RBP3.15□□□□□ -1.9
NEDD4-204ENST00000503468 NOTCH4Q99466 2003 aa3.15□□□□□ -1.9
NEDD4-204ENST00000503468 PRR19A6NJB7 356 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 LAD1O00515 517 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 ARHGAP6O43182 974 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 ZRANB2O95218 330 aaKnown RBP eCLIP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 FXR2P51116 673 aaKnown RBP eCLIP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 SRPK2P78362 688 aaKnown RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 CREB3L3Q68CJ9 461 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 IQCEQ6IPM2 695 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 GPATCH11Q8N954 259 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 CCHCR1Q8TD31 782 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 HOOK2Q96ED9 719 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 NAA15Q9BXJ9 866 aaKnown RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 CUEDC2Q9H467 287 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 IL37Q9NZH6 218 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 TRAF3IP3Q9Y228 551 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 MPHOSPH10O00566 681 aaKnown RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 ZKSCAN1P17029 563 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 ERCC5P28715 1186 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 LMAN1P49257 510 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 GRAPQ13588 217 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 KRT32Q14532 448 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 PCBP1Q15365 356 aaKnown RBP eCLIP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 FBXO38Q6PIJ6 1188 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 TEX11Q8IYF3 940 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 GRAPLQ8TC17 118 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 MIPOL1Q8TD10 442 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 RTF1Q92541 710 aaKnown RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 FOXP1Q9H334 677 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 FARP1Q9Y4F1 1045 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 ASTN2O75129 1339 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 CNTNAP5Q8WYK1 1306 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 PTPN7P35236 360 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 PEX19P40855 299 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 AMPD2Q01433 879 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 PLCB4Q15147 1175 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 STRIP1Q5VSL9 837 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 TRAF7Q6Q0C0 670 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 FOXP4Q8IVH2 680 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 ZNF513Q8N8E2 541 aaPredicted RBP3.15□□□□□ -1.91
NEDD4-204ENST00000503468 BICD2Q8TD16 824 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 AFAP1L1Q8TED9 768 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 NT5C3BQ969T7 300 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 DTNBP1Q96EV8 351 aa3.15□□□□□ -1.91
NEDD4-204ENST00000503468 TRIM64BA6NI03 449 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 KINO60870 393 aaKnown RBP3.14□□□□□ -1.91
NEDD4-204ENST00000503468 ERLIN2O94905 339 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 KMT5BQ4FZB7 885 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 ANKRD45Q5TZF3 282 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 SYT10Q6XYQ8 523 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 SDCCAG8Q86SQ7 713 aaPredicted RBP3.14□□□□□ -1.91
NEDD4-204ENST00000503468 CCAR2Q8N163 923 aaKnown RBP3.14□□□□□ -1.91
NEDD4-204ENST00000503468 SCG3Q8WXD2 468 aaKnown RBP3.14□□□□□ -1.91
NEDD4-204ENST00000503468 GOLGA1Q92805 767 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 TXLNGYQ9BZA5 131 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 PLCB1Q9NQ66 1216 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 ATXN2Q99700 1313 aaKnown RBP3.14□□□□□ -1.91
NEDD4-204ENST00000503468 NUP210Q8TEM1 1887 aaPredicted RBP3.14□□□□□ -1.91
NEDD4-204ENST00000503468 TRIM64A6NGJ6 449 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 GRIN3BO60391 1043 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 UQCRFS1P1P0C7P4 283 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 ZNF75DP51815 510 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 GUCY2DQ02846 1103 aa3.14□□□□□ -1.91
NEDD4-204ENST00000503468 PPFIA1Q13136 1202 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms