RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 LDLRAD1Q5T700 205 aa6.41□□□□□ -1.38
CCDC88A-212ENST00000474059 NT5DC1Q5TFE4 455 aa6.41□□□□□ -1.38
CCDC88A-212ENST00000474059 TDRD10Q5VZ19 366 aaKnown RBP6.41□□□□□ -1.38
CCDC88A-212ENST00000474059 DCAF15Q66K64 600 aa6.41□□□□□ -1.38
CCDC88A-212ENST00000474059 FERMT3Q86UX7 667 aa6.41□□□□□ -1.38
CCDC88A-212ENST00000474059 NOBOXO60393 691 aa6.4□□□□□ -1.38
CCDC88A-212ENST00000474059 ASGR2P07307 311 aa6.4□□□□□ -1.38
CCDC88A-212ENST00000474059 IFNGR1P15260 489 aa6.4□□□□□ -1.38
CCDC88A-212ENST00000474059 PFKLP17858 780 aa6.4□□□□□ -1.38
CCDC88A-212ENST00000474059 AXDND1Q5T1B0 1012 aaPredicted RBP6.4□□□□□ -1.38
CCDC88A-212ENST00000474059 HLA-DQA1Q5Y7H0 255 aa6.4□□□□□ -1.38
CCDC88A-212ENST00000474059 FCRL3Q96P31 734 aaPredicted RBP6.4□□□□□ -1.38
CCDC88A-212ENST00000474059 NT5C1AQ9BXI3 368 aa6.4□□□□□ -1.38
CCDC88A-212ENST00000474059 PDLIM7Q9NR12 457 aa6.4□□□□□ -1.38
CCDC88A-212ENST00000474059 TACR1P25103 407 aa6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 ZNF165P49910 485 aa6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 PMS1P54277 932 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 TARBP2Q15633 366 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 ERICH6BQ5W0A0 696 aa6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 INTS3Q68E01 1043 aaKnown RBP6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 BRF1Q92994 677 aa6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 RBM15Q96T37 977 aaKnown RBP eCLIP6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 MCMBPQ9BTE3 642 aa6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 BCAS3Q9H6U6 928 aa6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 GP6Q9HCN6 339 aa6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 ZNRF3Q9ULT6 936 aa6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 PMF1-BGLAPU3KQ54 211 aa6.39□□□□□ -1.39
CCDC88A-212ENST00000474059 GLI4P10075 376 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 TNFRSF1AP19438 455 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 MCM4P33991 863 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 PUM1Q14671 1186 aaKnown RBP eCLIP6.38□□□□□ -1.392e-6■□□□□ 8.9
CCDC88A-212ENST00000474059 ZYXQ15942 572 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 LRRFIP1Q32MZ4 808 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 ANKRD39Q53RE8 183 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 CYP2R1Q6VVX0 501 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 NLGN1Q8N2Q7 840 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 NOX5Q96PH1 765 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 DSCC1Q9BVC3 393 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 RNF38Q9H0F5 515 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 RXFP1Q9HBX9 757 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 SPATA6Q9NWH7 488 aaPredicted RBP6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 GGT7Q9UJ14 662 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 CNOT11Q9UKZ1 510 aaKnown RBP6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 MYRFQ9Y2G1 1151 aa6.38□□□□□ -1.39
CCDC88A-212ENST00000474059 CORO7P57737 925 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 BICRALQ6AI39 1079 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 ERICH6Q7L0X2 663 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 B3GNT8Q7Z7M8 397 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 AEBP1Q8IUX7 1158 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 CCDC144CPQ8IYA2 1237 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 TAB3Q8N5C8 712 aaPredicted RBP6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 NAT16Q8N8M0 369 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 NLGN2Q8NFZ4 835 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 NKD1Q969G9 470 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 BORCS6Q96GS4 357 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 PTCHD1Q96NR3 888 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 LNPKQ9C0E8 428 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 ZNF451Q9Y4E5 1061 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 FHOD1Q9Y613 1164 aa6.37□□□□□ -1.39
CCDC88A-212ENST00000474059 F8W031 263 aaPredicted RBP6.36□□□□□ -1.39
CCDC88A-212ENST00000474059 K7ESM1 405 aa6.36□□□□□ -1.39
CCDC88A-212ENST00000474059 CBFA2T2O43439 604 aa6.36□□□□□ -1.39
CCDC88A-212ENST00000474059 PPP1R11O60927 126 aaPredicted RBP6.36□□□□□ -1.39
CCDC88A-212ENST00000474059 PMLP29590 882 aa6.36□□□□□ -1.39
CCDC88A-212ENST00000474059 ADAM17P78536 824 aa6.36□□□□□ -1.39
CCDC88A-212ENST00000474059 CARFQ8N187 725 aa6.36□□□□□ -1.39
CCDC88A-212ENST00000474059 CD247P20963 164 aa6.35□□□□□ -1.39
CCDC88A-212ENST00000474059 UBXN11Q5T124 520 aa6.35□□□□□ -1.39
CCDC88A-212ENST00000474059 HS2ST1Q7LGA3 356 aa6.35□□□□□ -1.39
CCDC88A-212ENST00000474059 FIBCD1Q8N539 461 aa6.35□□□□□ -1.39
CCDC88A-212ENST00000474059 DDX1Q92499 740 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-212ENST00000474059 TSPAN17Q96FV3 270 aa6.35□□□□□ -1.39
CCDC88A-212ENST00000474059 MATN3O15232 486 aa6.34□□□□□ -1.39
CCDC88A-212ENST00000474059 ITGB3P05106 788 aa6.34□□□□□ -1.39
CCDC88A-212ENST00000474059 CNR2P34972 360 aa6.34□□□□□ -1.39
CCDC88A-212ENST00000474059 MAGEA10P43363 369 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-212ENST00000474059 RUFY4Q6ZNE9 571 aa6.34□□□□□ -1.39
CCDC88A-212ENST00000474059 JAMLQ86YT9 394 aa6.34□□□□□ -1.39
CCDC88A-212ENST00000474059 DHRS1Q96LJ7 313 aa6.34□□□□□ -1.39
CCDC88A-212ENST00000474059 USP40Q9NVE5 1235 aa6.34□□□□□ -1.39
CCDC88A-212ENST00000474059 AKAP8O43823 692 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-212ENST00000474059 NCAM1P13591 858 aa6.33□□□□□ -1.4
CCDC88A-212ENST00000474059 CWF19L1Q69YN2 538 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-212ENST00000474059 ZNF761Q86XN6 746 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-212ENST00000474059 SMARCC1Q92922 1105 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-212ENST00000474059 SYT3Q9BQG1 590 aa6.33□□□□□ -1.4
CCDC88A-212ENST00000474059 MTA3Q9BTC8 594 aa6.33□□□□□ -1.4
CCDC88A-212ENST00000474059 FAM86C1Q9NVL1 165 aa6.33□□□□□ -1.4
CCDC88A-212ENST00000474059 LTBP3Q9NS15 1303 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 A0A1W2PQ27 194 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 A0A1W2PQ64 194 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 A0A1W2PQC6 194 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 A0A1W2PQD8 194 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 TP53P04637 393 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 CD3EP07766 207 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 L1CAMP32004 1257 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 UNC5AQ6ZN44 842 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 SMARCC2Q8TAQ2 1214 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 ALG3Q92685 438 aa6.32□□□□□ -1.4
CCDC88A-212ENST00000474059 NOL6Q9H6R4 1146 aaKnown RBP6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms