RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 C1GALT1Q9NS00 363 aa5.7□□□□□ -1.5
CD44-202ENST00000278385 TMEM260Q9NX78 707 aa5.7□□□□□ -1.5
CD44-202ENST00000278385 ADAM30Q9UKF2 790 aa5.7□□□□□ -1.5
CD44-202ENST00000278385 ATP8A1Q9Y2Q0 1164 aa5.7□□□□□ -1.5
CD44-202ENST00000278385 FGD6Q6ZV73 1430 aa5.7□□□□□ -1.5
CD44-202ENST00000278385 FAM135AQ9P2D6 1515 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 KIF15Q9NS87 1388 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 DAPK1P53355 1430 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 NCOA1Q15788 1441 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 TLR3O15455 904 aaKnown RBP5.69□□□□□ -1.5
CD44-202ENST00000278385 DYNC1LI2O43237 492 aaPredicted RBP5.69□□□□□ -1.5
CD44-202ENST00000278385 ALDH1L1O75891 902 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 ETFBP38117 255 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 ZNF165P49910 485 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 TMEM95Q3KNT9 176 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 CCDC174Q6PII3 467 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 FAM196AQ6ZSG2 479 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 PAF1Q8N7H5 531 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 RHOVQ96L33 236 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 DUSP23Q9BVJ7 150 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 ZHX3Q9H4I2 956 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 COPRSQ9NQ92 184 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 PRDM5Q9NQX1 630 aaPredicted RBP5.69□□□□□ -1.5
CD44-202ENST00000278385 PZPP20742 1482 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 TCOF1Q13428 1488 aaKnown RBP5.69□□□□□ -1.5
CD44-202ENST00000278385 ADGBQ8N7X0 1667 aa5.69□□□□□ -1.5
CD44-202ENST00000278385 KANK1Q14678 1352 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 MAST1Q9Y2H9 1570 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 ERBINQ96RT1 1412 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 GFRA2O00451 464 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 TBX3O15119 743 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 KCNQ2O43526 872 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 TIMM44O43615 452 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 ZRANB2O95218 330 aaKnown RBP eCLIP5.68□□□□□ -1.5
CD44-202ENST00000278385 ETV3P41162 512 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 TTF1Q15361 905 aaPredicted RBP5.68□□□□□ -1.5
CD44-202ENST00000278385 ARTNQ5T4W7 220 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 C10orf62Q5T681 223 aaPredicted RBP5.68□□□□□ -1.5
CD44-202ENST00000278385 SEZ6L2Q6UXD5 910 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 REC114Q7Z4M0 266 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 STK11IPQ8N1F8 1099 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 FAM13CQ8NE31 585 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 XAGE3Q8WTP9 111 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 NKD1Q969G9 470 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 TMEM87BQ96K49 555 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 COX4I2Q96KJ9 171 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 MIPEPQ99797 713 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 KCNG1Q9UIX4 513 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 LZTS1Q9Y250 596 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 PLA2R1Q13018 1463 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 SHANK2Q9UPX8 1470 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 C3P01024 1663 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 PREX1Q8TCU6 1659 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 KDM5DQ9BY66 1539 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 DUOX2Q9NRD8 1548 aa5.68□□□□□ -1.5
CD44-202ENST00000278385 MROH2AA6NES4 1674 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 A2ML1A8K2U0 1454 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 CCDC163A0A0D9SF12 145 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 FAM221AA4D161 298 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 FAM155AB1AL88 458 aaPredicted RBP5.67□□□□□ -1.5
CD44-202ENST00000278385 NPHP1O15259 732 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 WNT11O96014 354 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 CST3P01034 146 aaPredicted RBP5.67□□□□□ -1.5
CD44-202ENST00000278385 LDHCP07864 332 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 FAM163BP0C2L3 166 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 POU3F3P20264 500 aaPredicted RBP5.67□□□□□ -1.5
CD44-202ENST00000278385 CAP2P40123 477 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 LRRC41Q15345 812 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 LRRFIP1Q32MZ4 808 aaKnown RBP5.67□□□□□ -1.5
CD44-202ENST00000278385 SEZ6Q53EL9 994 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 INO80DQ53TQ3 878 aaPredicted RBP5.67□□□□□ -1.5
CD44-202ENST00000278385 FBXL19Q6PCT2 694 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 MCATQ8IVS2 390 aaKnown RBP5.67□□□□□ -1.5
CD44-202ENST00000278385 MRPL41Q8IXM3 137 aaKnown RBP5.67□□□□□ -1.5
CD44-202ENST00000278385 PHACTR4Q8IZ21 702 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 NETO1Q8TDF5 533 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 MISP3Q96FF7 219 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 NEUROD6Q96NK8 337 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 DNAJC7Q99615 494 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 NT5C1AQ9BXI3 368 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 CCDC113Q9H0I3 377 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 MKNK2Q9HBH9 465 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 KLHL3Q9UH77 587 aa5.67□□□□□ -1.5
CD44-202ENST00000278385 ARHGAP31Q2M1Z3 1444 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 NLRP1Q9C000 1473 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 TMEM265A0A087WTH1 108 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 PRR19A6NJB7 356 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 ALG1L2C9J202 215 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 GRIN3BO60391 1043 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 PMLP29590 882 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 GBP1P32455 592 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 NASPP49321 788 aaPredicted RBP5.66□□□□□ -1.5
CD44-202ENST00000278385 CDK8P49336 464 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 SQSTM1Q13501 440 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 KCTD2Q14681 263 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 TKFCQ3LXA3 575 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 SFRP5Q5T4F7 317 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 L1TD1Q5T7N2 865 aaKnown RBP5.66□□□□□ -1.5
CD44-202ENST00000278385 PRAMEF13Q5VWM6 474 aa5.66□□□□□ -1.5
CD44-202ENST00000278385 LETMD1Q6P1Q0 360 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms