RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 EBF1Q9UH73 591 aa9.94□□□□□ -0.82
SS18-214ENST00000580003 U2SURPO15042 1029 aaKnown RBP9.93□□□□□ -0.82
SS18-214ENST00000580003 USP2O75604 605 aaPredicted RBP9.93□□□□□ -0.82
SS18-214ENST00000580003 GJB6O95452 261 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 GLI1P08151 1106 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 GRB10Q13322 594 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 SV2CQ496J9 727 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 RTP2Q5QGT7 225 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 CEP128Q6ZU80 1094 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 EEPD1Q7L9B9 569 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 BVESQ8NE79 360 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 HHIPL1Q96JK4 782 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 C19orf44Q9H6X5 657 aa9.93□□□□□ -0.82
SS18-214ENST00000580003 CARMIL2Q6F5E8 1435 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 SUSD5O60279 629 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 VAMP4O75379 141 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 RAB33AQ14088 237 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 DDR2Q16832 855 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 DPY19L1Q2PZI1 675 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 CELF2-AS1Q8N7Q2 184 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 ARMC5Q96C12 935 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 FCRL3Q96P31 734 aaPredicted RBP9.92□□□□□ -0.82
SS18-214ENST00000580003 HIRIP3Q9BW71 556 aaPredicted RBP9.92□□□□□ -0.82
SS18-214ENST00000580003 ERVK13-1Q9NX77 482 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 LRP2BPQ9P2M1 347 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 GPR160Q9UJ42 338 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 RNF114Q9Y508 228 aa9.92□□□□□ -0.82
SS18-214ENST00000580003 IFNGR1P15260 489 aa9.91□□□□□ -0.82
SS18-214ENST00000580003 MPZL3Q6UWV2 235 aa9.91□□□□□ -0.82
SS18-214ENST00000580003 ZNF513Q8N8E2 541 aaPredicted RBP9.91□□□□□ -0.82
SS18-214ENST00000580003 GPR55Q9Y2T6 319 aaPredicted RBP9.91□□□□□ -0.82
SS18-214ENST00000580003 KCNH1O95259 989 aa9.9□□□□□ -0.82
SS18-214ENST00000580003 RTP1P59025 263 aa9.9□□□□□ -0.82
SS18-214ENST00000580003 SNX17Q15036 470 aa9.9□□□□□ -0.82
SS18-214ENST00000580003 MRM1Q6IN84 353 aaKnown RBP9.9□□□□□ -0.82
SS18-214ENST00000580003 RNF32Q9H0A6 362 aa9.9□□□□□ -0.82
SS18-214ENST00000580003 SP110Q9HB58 689 aa9.9□□□□□ -0.82
SS18-214ENST00000580003 FAM53CQ9NYF3 392 aa9.9□□□□□ -0.82
SS18-214ENST00000580003 EMC9Q9Y3B6 208 aa9.9□□□□□ -0.82
SS18-214ENST00000580003 FADS2P1A8MWK0 482 aa9.89□□□□□ -0.83
SS18-214ENST00000580003 STXBP3O00186 592 aa9.89□□□□□ -0.83
SS18-214ENST00000580003 FGF10O15520 208 aaPredicted RBP9.89□□□□□ -0.83
SS18-214ENST00000580003 TIGD5Q53EQ6 642 aa9.89□□□□□ -0.83
SS18-214ENST00000580003 HLA-DQA1Q5Y7H0 255 aa9.89□□□□□ -0.83
SS18-214ENST00000580003 CYP2R1Q6VVX0 501 aa9.89□□□□□ -0.83
SS18-214ENST00000580003 EPN3Q9H201 632 aa9.89□□□□□ -0.83
SS18-214ENST00000580003 WTIPA6NIX2 430 aaPredicted RBP9.88□□□□□ -0.83
SS18-214ENST00000580003 AGRPO00253 132 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 AURKAO14965 403 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 NRDCO43847 1150 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 SEPHS1P49903 392 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 NBPF6Q5VWK0 638 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 EEF1DP3Q658K8 133 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 RCSD1Q6JBY9 416 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 GALNT18Q6P9A2 607 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 KSR1Q8IVT5 923 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 SREK1Q8WXA9 508 aaKnown RBP9.88□□□□□ -0.83
SS18-214ENST00000580003 NBPF4Q96M43 638 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 CWC22Q9HCG8 908 aaKnown RBP9.88□□□□□ -0.83
SS18-214ENST00000580003 BACE2Q9Y5Z0 518 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 TAF6LQ9Y6J9 622 aa9.88□□□□□ -0.83
SS18-214ENST00000580003 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.88□□□□□ -0.83
SS18-214ENST00000580003 A0A1W2PQ45 241 aaPredicted RBP9.87□□□□□ -0.83
SS18-214ENST00000580003 A0A1W2PQY0 241 aa9.87□□□□□ -0.83
SS18-214ENST00000580003 ZNF503-AS2A6NEH8 195 aa9.87□□□□□ -0.83
SS18-214ENST00000580003 PSPNO60542 156 aa9.87□□□□□ -0.83
SS18-214ENST00000580003 TBC1D8O95759 1140 aa9.87□□□□□ -0.83
SS18-214ENST00000580003 JAMLQ86YT9 394 aa9.87□□□□□ -0.83
SS18-214ENST00000580003 TRIM59Q8IWR1 403 aa9.87□□□□□ -0.83
SS18-214ENST00000580003 LIN37Q96GY3 246 aaPredicted RBP9.87□□□□□ -0.83
SS18-214ENST00000580003 PTCHD1Q96NR3 888 aa9.87□□□□□ -0.83
SS18-214ENST00000580003 MCMBPQ9BTE3 642 aa9.87□□□□□ -0.83
SS18-214ENST00000580003 C2orf71A6NGG8 1288 aa9.86□□□□□ -0.83
SS18-214ENST00000580003 HSF5Q4G112 596 aaPredicted RBP9.86□□□□□ -0.83
SS18-214ENST00000580003 TMEM52Q8NDY8 209 aa9.86□□□□□ -0.83
SS18-214ENST00000580003 MRGPRX3Q96LB0 322 aa9.86□□□□□ -0.83
SS18-214ENST00000580003 SLC6A17Q9H1V8 727 aa9.86□□□□□ -0.83
SS18-214ENST00000580003 A0A1W2PQ27 194 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 A0A1W2PQ64 194 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 A0A1W2PQC6 194 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 A0A1W2PQD8 194 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 LRRC10BA6NIK2 292 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 ITGAVP06756 1048 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 SLC10A6Q3KNW5 377 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 GTF2IRD2BQ6EKJ0 949 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 SLCO6A1Q86UG4 719 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 GTF2IRD2Q86UP8 949 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 ZNF227Q86WZ6 799 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 LGR4Q9BXB1 951 aa9.85□□□□□ -0.83
SS18-214ENST00000580003 YBX2Q9Y2T7 364 aaKnown RBP9.85□□□□□ -0.83
SS18-214ENST00000580003 NOTOA8MTQ0 251 aa9.84□□□□□ -0.83
SS18-214ENST00000580003 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.84□□□□□ -0.83
SS18-214ENST00000580003 MLANAQ16655 118 aa9.84□□□□□ -0.83
SS18-214ENST00000580003 SOGA3Q5TF21 947 aa9.84□□□□□ -0.83
SS18-214ENST00000580003 NLRX1Q86UT6 975 aa9.84□□□□□ -0.83
SS18-214ENST00000580003 SIRT2Q8IXJ6 389 aa9.84□□□□□ -0.83
SS18-214ENST00000580003 SIRPGQ9P1W8 387 aa9.84□□□□□ -0.83
SS18-214ENST00000580003 RBL2Q08999 1139 aa9.83□□□□□ -0.84
SS18-214ENST00000580003 SCRN1Q12765 414 aa9.83□□□□□ -0.84
SS18-214ENST00000580003 BTN2A2Q8WVV5 523 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 173.9 ms