RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 ATP2C2O75185 946 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 NTSR2O95665 410 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 HDLBPQ00341 1268 aaKnown RBP18.19■□□□□ 0.5
LINC00554-201ENST00000564841 SATB1Q01826 763 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 UBXN1Q04323 297 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 NAA35Q5VZE5 725 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 FBXL16Q8N461 479 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 NUP133Q8WUM0 1156 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 ZNF652Q9Y2D9 606 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 RFX7Q2KHR2 1363 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 IDEP14735 1019 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 PUM3Q15397 648 aaKnown RBP18.19■□□□□ 0.5
LINC00554-201ENST00000564841 SLC51AQ86UW1 340 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 PAGE5Q96GU1 130 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 FAXDC2Q96IV6 333 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 CABP5Q9NP86 173 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 TACC3Q9Y6A5 838 aa18.19■□□□□ 0.5
LINC00554-201ENST00000564841 CHUKO15111 745 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 FSBPO95073 299 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 NF2P35240 595 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 COPB1P53618 953 aaKnown RBP18.18■□□□□ 0.5
LINC00554-201ENST00000564841 TMEM67Q5HYA8 995 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 PAPD7Q5XG87 772 aaKnown RBP18.18■□□□□ 0.5
LINC00554-201ENST00000564841 KIAA1328Q86T90 577 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 SPATA20Q8TB22 786 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 LRP6O75581 1613 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 TARSL2A2RTX5 802 aaKnown RBP18.18■□□□□ 0.5
LINC00554-201ENST00000564841 GOLGA8AA7E2F4 631 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 WNT7AO00755 349 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 ZPR1O75312 459 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 RPSAP08865 295 aaKnown RBP18.18■□□□□ 0.5
LINC00554-201ENST00000564841 FECHP22830 423 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 GYG1P46976 350 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 NNTQ13423 1086 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 WDR59Q6PJI9 974 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 CCDC13Q8IYE1 715 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 VGLL2Q8N8G2 317 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 ZIM3Q96PE6 472 aa18.18■□□□□ 0.5
LINC00554-201ENST00000564841 ESYT3A0FGR9 886 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 ZSCAN5CA6NGD5 496 aaPredicted RBP18.17■□□□□ 0.5
LINC00554-201ENST00000564841 BRD2P25440 801 aaKnown RBP18.17■□□□□ 0.5
LINC00554-201ENST00000564841 CHRNDQ07001 517 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 SF3A3Q12874 501 aaKnown RBP eCLIP18.17■□□□□ 0.5
LINC00554-201ENST00000564841 SLC4A8Q2Y0W8 1093 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 CCDC40Q4G0X9 1142 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 VEZTQ9HBM0 779 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 DDX20Q9UHI6 824 aaKnown RBP18.17■□□□□ 0.5
LINC00554-201ENST00000564841 COL22A1Q8NFW1 1626 aaPredicted RBP18.17■□□□□ 0.5
LINC00554-201ENST00000564841 SLC5A1P13866 664 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 LSP1P33241 339 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 NAP1L1P55209 391 aaKnown RBP18.17■□□□□ 0.5
LINC00554-201ENST00000564841 DDR1Q08345 913 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 RASGRF1Q13972 1273 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 FAM228AQ86W67 206 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 NBPF5PQ86XG9 351 aaPredicted RBP18.17■□□□□ 0.5
LINC00554-201ENST00000564841 MAGEB6Q8N7X4 407 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 LPIN2Q92539 896 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 SCLT1Q96NL6 688 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 SLC40A1Q9NP59 571 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 IFIT3O14879 490 aaKnown RBP18.17■□□□□ 0.5
LINC00554-201ENST00000564841 MCM3P25205 808 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 PARP10Q53GL7 1025 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 LRCH2Q5VUJ6 765 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 RRAGBQ5VZM2 374 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 IQCA1Q86XH1 822 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 TRIML1Q8N9V2 468 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 CCDC51Q96ER9 411 aa18.17■□□□□ 0.5
LINC00554-201ENST00000564841 AFF2P51816 1311 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 ZBTB43O43298 467 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 KLK7P49862 253 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 PREPLQ4J6C6 727 aaPredicted RBP18.16■□□□□ 0.5
LINC00554-201ENST00000564841 CEP85LQ5SZL2 805 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 KRT26Q7Z3Y9 468 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 AMOTL1Q8IY63 956 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 CTAGE1Q96RT6 745 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.16■□□□□ 0.5
LINC00554-201ENST00000564841 TRIM49BA6NDI0 452 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 SH2B2O14492 632 aaPredicted RBP18.16■□□□□ 0.5
LINC00554-201ENST00000564841 C21orf2O43822 256 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 FAM153BP0C7A2 387 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 FAM153CQ494X1 144 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 B4GALNT4Q76KP1 1039 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 ZNF473Q8WTR7 871 aaKnown RBP18.16■□□□□ 0.5
LINC00554-201ENST00000564841 HAUS4Q9H6D7 363 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 FAM153AQ9UHL3 310 aa18.16■□□□□ 0.5
LINC00554-201ENST00000564841 GOLGA8KD6RF30 607 aa18.15■□□□□ 0.5
LINC00554-201ENST00000564841 OPLAHO14841 1288 aa18.15■□□□□ 0.5
LINC00554-201ENST00000564841 PPP1R12BO60237 982 aaPredicted RBP18.15■□□□□ 0.5
LINC00554-201ENST00000564841 MBD4O95243 580 aa18.15■□□□□ 0.5
LINC00554-201ENST00000564841 EARS2Q5JPH6 523 aaKnown RBP18.15■□□□□ 0.5
LINC00554-201ENST00000564841 SPATA5Q8NB90 893 aa18.15■□□□□ 0.5
LINC00554-201ENST00000564841 CELF1Q92879 486 aaKnown RBP18.15■□□□□ 0.5
LINC00554-201ENST00000564841 RUFY1Q96T51 708 aa18.15■□□□□ 0.5
LINC00554-201ENST00000564841 SETDB2Q96T68 719 aa18.15■□□□□ 0.5
LINC00554-201ENST00000564841 AGPAT5Q9NUQ2 364 aa18.15■□□□□ 0.5
LINC00554-201ENST00000564841 ZSWIM5Q9P217 1185 aa18.15■□□□□ 0.5
LINC00554-201ENST00000564841 PATL2C9JE40 543 aaKnown RBP18.15■□□□□ 0.5
LINC00554-201ENST00000564841 TTF1Q15361 905 aaPredicted RBP18.15■□□□□ 0.5
LINC00554-201ENST00000564841 SYMPKQ92797 1274 aaKnown RBP18.15■□□□□ 0.5
LINC00554-201ENST00000564841 LRP2BPQ9P2M1 347 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms