RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 NUP88Q99567 741 aaPredicted RBP14.82□□□□□ -0.04
LDLR-203ENST00000535915 LAD1O00515 517 aa14.82□□□□□ -0.04
LDLR-203ENST00000535915 C15orf52Q6ZUT6 534 aaKnown RBP14.82□□□□□ -0.04
LDLR-203ENST00000535915 ZNF771Q7L3S4 317 aaPredicted RBP14.82□□□□□ -0.04
LDLR-203ENST00000535915 CERS3Q8IU89 383 aa14.82□□□□□ -0.04
LDLR-203ENST00000535915 TMEM51Q9NW97 253 aa14.82□□□□□ -0.04
LDLR-203ENST00000535915 THSD7AQ9UPZ6 1657 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 TRIM49BA6NDI0 452 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 PARP1P09874 1014 aaKnown RBP14.81□□□□□ -0.04
LDLR-203ENST00000535915 C16orf86Q6ZW13 317 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 FNBP4Q8N3X1 1017 aaPredicted RBP14.81□□□□□ -0.04
LDLR-203ENST00000535915 SNED1Q8TER0 1413 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 A0A0U1RQJ8 604 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 H7C1D1 291 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 BMS1Q14692 1282 aaKnown RBP14.81□□□□□ -0.04
LDLR-203ENST00000535915 ATRIPQ8WXE1 791 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 SPZ1Q9BXG8 430 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 CCSER1Q9C0I3 900 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 ZMYND12Q9H0C1 365 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 FAM53CQ9NYF3 392 aa14.81□□□□□ -0.04
LDLR-203ENST00000535915 GPR75-ASB3A0A0A6YYF3 556 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 KIF5CO60282 957 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 UBXN1Q04323 297 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 LETM2Q2VYF4 491 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 USP17L2Q6R6M4 530 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 ADSSL1Q8N142 457 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 VAT1LQ9HCJ6 419 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 ABHD10Q9NUJ1 306 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 GGA1Q9UJY5 639 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 EP400Q96L91 3159 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 CCNT1O60563 726 aaKnown RBP14.8□□□□□ -0.04
LDLR-203ENST00000535915 ATP2B4P23634 1241 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 PRPHP41219 470 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 STIM1Q13586 685 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 TRIM14Q14142 442 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 TMCO3Q6UWJ1 677 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 TMTC1Q8IUR5 882 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 NEDD1Q8NHV4 660 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 RRP36Q96EU6 259 aaKnown RBP14.8□□□□□ -0.04
LDLR-203ENST00000535915 SEC63Q9UGP8 760 aaKnown RBP14.8□□□□□ -0.04
LDLR-203ENST00000535915 FLT1P17948 1338 aa14.8□□□□□ -0.04
LDLR-203ENST00000535915 SMCO2A6NFE2 343 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 PES1O00541 588 aaKnown RBP14.79□□□□□ -0.04
LDLR-203ENST00000535915 MYL1P05976 194 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 PLCG2P16885 1265 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 KCNB1Q14721 858 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 MFSD14BQ5SR56 506 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 TEX35Q5T0J7 233 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 KRT25Q7Z3Z0 450 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 C6orf50Q9HD87 102 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 KBTBD4Q9NVX7 518 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 FOCADQ5VW36 1801 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.79□□□□□ -0.04
LDLR-203ENST00000535915 RNF225M0QZC1 329 aaPredicted RBP14.79□□□□□ -0.04
LDLR-203ENST00000535915 KLRC4O43908 158 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 OR52Z1P0C646 297 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 IL1R1P14778 569 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 GABPB1Q06547 395 aaPredicted RBP14.79□□□□□ -0.04
LDLR-203ENST00000535915 NONOQ15233 471 aaKnown RBP eCLIP14.79□□□□□ -0.045e-7■□□□□ 10.7
LDLR-203ENST00000535915 SOGA3Q5TF21 947 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 CABP7Q86V35 215 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 ACRBPQ8NEB7 543 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 CEP95Q96GE4 821 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 EPC1Q9H2F5 836 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 PSMA7O14818 248 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 FECHP22830 423 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 GNA11P29992 359 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 KRT9P35527 623 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 PMS1P54277 932 aaKnown RBP14.79□□□□□ -0.04
LDLR-203ENST00000535915 ERVK-24P63145 666 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 ST5P78524 1137 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 ZNF569Q5MCW4 686 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 CYP26C1Q6V0L0 522 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 IRF2BP1Q8IU81 584 aa14.79□□□□□ -0.04
LDLR-203ENST00000535915 TTF2Q9UNY4 1162 aaKnown RBP14.79□□□□□ -0.04
LDLR-203ENST00000535915 UBR3Q6ZT12 1888 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 VGLL3A8MV65 326 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 RHOBTB3O94955 611 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 PLCG1P19174 1290 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 TXNRD1Q16881 649 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 RBM17Q96I25 401 aaKnown RBP14.78□□□□□ -0.04
LDLR-203ENST00000535915 TRIM47Q96LD4 638 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 FHOD1Q9Y613 1164 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 NEK8Q86SG6 692 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 SLF2Q8IX21 1173 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 GPR161Q8N6U8 529 aaKnown RBP14.78□□□□□ -0.04
LDLR-203ENST00000535915 GIMAP8Q8ND71 665 aaPredicted RBP14.78□□□□□ -0.04
LDLR-203ENST00000535915 CERKQ8TCT0 537 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 LRRC15Q8TF66 581 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 AK8Q96MA6 479 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 PIGSQ96S52 555 aa14.78□□□□□ -0.04
LDLR-203ENST00000535915 RHBDL3P58872 404 aa14.77□□□□□ -0.04
LDLR-203ENST00000535915 CRY2Q49AN0 593 aa14.77□□□□□ -0.04
LDLR-203ENST00000535915 LRRC4BQ9NT99 713 aa14.77□□□□□ -0.04
LDLR-203ENST00000535915 MAGEC2Q9UBF1 373 aaPredicted RBP14.77□□□□□ -0.04
LDLR-203ENST00000535915 SERPINB2P05120 415 aa14.77□□□□□ -0.05
LDLR-203ENST00000535915 PNMA6AP0CW24 399 aaPredicted RBP14.77□□□□□ -0.05
LDLR-203ENST00000535915 EEF1GP26641 437 aaKnown RBP14.77□□□□□ -0.05
LDLR-203ENST00000535915 RSRC2Q7L4I2 434 aaKnown RBP14.77□□□□□ -0.05
LDLR-203ENST00000535915 GOLGA1Q92805 767 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms