RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 FAM86C1Q9NVL1 165 aa7.38□□□□□ -1.23
CD44-231ENST00000531110 USP35Q9P2H5 1018 aa7.38□□□□□ -1.23
CD44-231ENST00000531110 CGGBP1Q9UFW8 167 aaPredicted RBP7.38□□□□□ -1.23
CD44-231ENST00000531110 DNAJC25-GNG10A0A024R161 153 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 FITM1A5D6W6 292 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 H0Y8X5 98 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 AFMP43652 599 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 SERINC3Q13530 473 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 RALGPS1Q5JS13 557 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 MRM1Q6IN84 353 aaKnown RBP7.37□□□□□ -1.23
CD44-231ENST00000531110 ADAT2Q7Z6V5 191 aaKnown RBP7.37□□□□□ -1.23
CD44-231ENST00000531110 SPPL2CQ8IUH8 684 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 LILRA2Q8N149 483 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 CELF2-AS1Q8N7Q2 184 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 BVESQ8NE79 360 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 MICAL1Q8TDZ2 1067 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 UBXN4Q92575 508 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 BRF1Q92994 677 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 SLC12A9Q9BXP2 914 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 CCDC113Q9H0I3 377 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 ADAMTS10Q9H324 1103 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 TNFRSF10DQ9UBN6 386 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 EMC9Q9Y3B6 208 aa7.37□□□□□ -1.23
CD44-231ENST00000531110 RAC2P15153 192 aa7.36□□□□□ -1.23
CD44-231ENST00000531110 RCSD1Q6JBY9 416 aa7.36□□□□□ -1.23
CD44-231ENST00000531110 CYP2R1Q6VVX0 501 aa7.36□□□□□ -1.23
CD44-231ENST00000531110 MKL1Q969V6 931 aa7.36□□□□□ -1.23
CD44-231ENST00000531110 MAP6Q96JE9 813 aa7.36□□□□□ -1.23
CD44-231ENST00000531110 FGD4Q96M96 766 aa7.36□□□□□ -1.23
CD44-231ENST00000531110 PUS7Q96PZ0 661 aaKnown RBP7.36□□□□□ -1.23
CD44-231ENST00000531110 MINPP1Q9UNW1 487 aa7.36□□□□□ -1.23
CD44-231ENST00000531110 B2RBV5 119 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 NOP56O00567 594 aaKnown RBP7.35□□□□□ -1.23
CD44-231ENST00000531110 CLSTN1O94985 981 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 AMPD2Q01433 879 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 CALD1Q05682 793 aaKnown RBP7.35□□□□□ -1.23
CD44-231ENST00000531110 SNX17Q15036 470 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 RTP2Q5QGT7 225 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 WAPLQ7Z5K2 1190 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 TRIM59Q8IWR1 403 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 SGSM3Q96HU1 749 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 MRGPRX3Q96LB0 322 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 APEX2Q9UBZ4 518 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 AKT3Q9Y243 479 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 SUGT1Q9Y2Z0 365 aa7.35□□□□□ -1.23
CD44-231ENST00000531110 WASHC2CQ9Y4E1 1318 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 IQCA1LA6NCM1 817 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 AGRPO00253 132 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 MEIS1O00470 390 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 PAPLNO95428 1278 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 RPL10P27635 214 aaKnown RBP7.34□□□□□ -1.23
CD44-231ENST00000531110 RASGRF1Q13972 1273 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 SLC10A6Q3KNW5 377 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 EEF1DP3Q658K8 133 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 MCTP1Q6DN14 999 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 ADCY4Q8NFM4 1077 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 ZDHHC15Q96MV8 337 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 FCRL3Q96P31 734 aaPredicted RBP7.34□□□□□ -1.23
CD44-231ENST00000531110 SP110Q9HB58 689 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 ERVK13-1Q9NX77 482 aa7.34□□□□□ -1.23
CD44-231ENST00000531110 PPP1R1BQ9UD71 204 aaPredicted RBP7.34□□□□□ -1.23
CD44-231ENST00000531110 AURKAO14965 403 aa7.33□□□□□ -1.24
CD44-231ENST00000531110 FGF10O15520 208 aaPredicted RBP7.33□□□□□ -1.24
CD44-231ENST00000531110 TICAM2Q86XR7 235 aa7.33□□□□□ -1.24
CD44-231ENST00000531110 DHX37Q8IY37 1157 aaKnown RBP7.33□□□□□ -1.24
CD44-231ENST00000531110 CCDC140Q96MF4 163 aa7.33□□□□□ -1.24
CD44-231ENST00000531110 ZMYM5Q9UJ78 669 aa7.33□□□□□ -1.24
CD44-231ENST00000531110 NAP1L2Q9ULW6 460 aaPredicted RBP7.33□□□□□ -1.24
CD44-231ENST00000531110 TRBV23OR9-2A0A075B6M9 112 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 A0A1W2PQ45 241 aaPredicted RBP7.32□□□□□ -1.24
CD44-231ENST00000531110 A0A1W2PQY0 241 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 CAPNS1P04632 268 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 TAL1P17542 331 aaPredicted RBP7.32□□□□□ -1.24
CD44-231ENST00000531110 HK2P52789 917 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 SV2CQ496J9 727 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 ZNF227Q86WZ6 799 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 ANP32BQ92688 251 aaKnown RBP7.32□□□□□ -1.24
CD44-231ENST00000531110 ASIC4Q96FT7 647 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 HHIPL1Q96JK4 782 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 CDADC1Q9BWV3 514 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 CYP26B1Q9NR63 512 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 ST7Q9NRC1 585 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 AP5S1Q9NUS5 200 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 BACE2Q9Y5Z0 518 aa7.32□□□□□ -1.24
CD44-231ENST00000531110 FADS2P1A8MWK0 482 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 PDPK1O15530 556 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 NRDCO43847 1150 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 FKTNO75072 461 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 SCG5P05408 212 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 CD3EP07766 207 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 GSTM1P09488 218 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 SETQ01105 290 aaPredicted RBP7.31□□□□□ -1.24
CD44-231ENST00000531110 PPP2R5DQ14738 602 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 ZSWIM9Q86XI8 627 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 FTSJ3Q8IY81 847 aaKnown RBP7.31□□□□□ -1.24
CD44-231ENST00000531110 FAM43AQ8N2R8 423 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 MYLIPQ8WY64 445 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 COPS5Q92905 334 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 KIRREL1Q96J84 757 aa7.31□□□□□ -1.24
CD44-231ENST00000531110 NKX2-4Q9H2Z4 354 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms