RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 FAM89AQ96GI7 184 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 RNPC3Q96LT9 517 aaKnown RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 CEP63Q96MT8 703 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 GAS2L1Q99501 681 aaPredicted RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 NT5C1AQ9BXI3 368 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 OXCT2Q9BYC2 517 aaPredicted RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 LRRCC1Q9C099 1032 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 ABCB6Q9NP58 842 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 LRRC4BQ9NT99 713 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 SRP68Q9UHB9 627 aaKnown RBP5.05□□□□□ -1.6
CD44-226ENST00000527889 HDAC5Q9UQL6 1122 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 LRRC37AA6NMS7 1700 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 KIAA1551Q9HCM1 1747 aa5.05□□□□□ -1.6
CD44-226ENST00000527889 PSME4Q14997 1843 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 SLX4Q8IY92 1834 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 KIF13BQ9NQT8 1826 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 SALL3Q9BXA9 1300 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 CDHR2Q9BYE9 1310 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 BAZ2BQ9UIF8 2168 aaKnown RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 MYH15Q9Y2K3 1946 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 A0A1B0GTH6 734 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 TMEM238LA0A1B0GVL6 79 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 FOXN1O15353 648 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 RAB11FIP3O75154 756 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 RPS6KA4O75676 772 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 F11P03951 625 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 EDN3P14138 238 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 HCLS1P14317 486 aaPredicted RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 GSPT1P15170 499 aaKnown RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 LORP23490 312 aaPredicted RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 PDE1AP54750 535 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 G3BP1Q13283 466 aaKnown RBP eCLIP5.04□□□□□ -1.6
CD44-226ENST00000527889 RAB33AQ14088 237 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 UBAP2LQ14157 1087 aaKnown RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 GAS6Q14393 721 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 RABL6Q3YEC7 729 aaPredicted RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 SUSD4Q5VX71 490 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 RIPOR1Q6ZS17 1223 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 SV2BQ7L1I2 683 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 TRIM22Q8IYM9 498 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 ZNF34Q8IZ26 560 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 PHC3Q8NDX5 983 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 KIF1BPQ96EK5 621 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 SRPK1Q96SB4 655 aaKnown RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 BRINP2Q9C0B6 783 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 PRDM16Q9HAZ2 1276 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 PRDM10Q9NQV6 1147 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 KANSL3Q9P2N6 904 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 TRMT112Q9UI30 125 aaKnown RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 SALL4Q9UJQ4 1053 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 NIP7Q9Y221 180 aaKnown RBP eCLIP5.04□□□□□ -1.6
CD44-226ENST00000527889 NOP58Q9Y2X3 529 aaKnown RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 FOCADQ5VW36 1801 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 POLR2AP24928 1970 aaKnown RBP5.04□□□□□ -1.6
CD44-226ENST00000527889 MAST2Q6P0Q8 1798 aa5.04□□□□□ -1.6
CD44-226ENST00000527889 ZNF646O15015 1829 aaPredicted RBP5.03□□□□□ -1.6
CD44-226ENST00000527889 GPR25O00155 361 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 IRS4O14654 1257 aaPredicted RBP5.03□□□□□ -1.6
CD44-226ENST00000527889 FBXO24O75426 580 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 TOMM70O94826 608 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 SASH1O94885 1247 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 MAP4K4O95819 1239 aaPredicted RBP5.03□□□□□ -1.6
CD44-226ENST00000527889 MX1P20591 662 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 IGBP1P78318 339 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 FAM160A1Q05DH4 1040 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 RASA3Q14644 834 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 MAP3K11Q16584 847 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 LRRC24Q50LG9 513 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 HSP90AB4PQ58FF6 505 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 BMP2KLQ5H9B9 411 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 TBC1D9BQ66K14 1250 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 CNPY4Q8N129 248 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 ZBTB38Q8NAP3 1195 aaPredicted RBP5.03□□□□□ -1.6
CD44-226ENST00000527889 OR13H1Q8NG92 308 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 HNRNPLLQ8WVV9 542 aaKnown RBP5.03□□□□□ -1.6
CD44-226ENST00000527889 GTPBP3Q969Y2 492 aaKnown RBP5.03□□□□□ -1.6
CD44-226ENST00000527889 TCF12Q99081 682 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 PLA2G12BQ9BX93 195 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 CCDC8Q9H0W5 538 aaPredicted RBP5.03□□□□□ -1.6
CD44-226ENST00000527889 RUBCNLQ9H714 662 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 SNTG2Q9NY99 539 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 UBP1Q9NZI7 540 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 NARFQ9UHQ1 456 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 AKAP2Q9Y2D5 859 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 ZNF652Q9Y2D9 606 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 SCN9AQ15858 1988 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 ZNF609O15014 1411 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 RIC1Q4ADV7 1423 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 LAMB1P07942 1786 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 ABCC12Q96J65 1359 aa5.03□□□□□ -1.6
CD44-226ENST00000527889 SH3TC1Q8TE82 1336 aa5.02□□□□□ -1.61
CD44-226ENST00000527889 hCG_2014768A0A024R1R8 64 aa5.02□□□□□ -1.61
CD44-226ENST00000527889 FAM221BA6H8Z2 402 aa5.02□□□□□ -1.61
CD44-226ENST00000527889 NTSR2O95665 410 aa5.02□□□□□ -1.61
CD44-226ENST00000527889 APBA3O96018 575 aa5.02□□□□□ -1.61
CD44-226ENST00000527889 PF4P02776 101 aa5.02□□□□□ -1.61
CD44-226ENST00000527889 PTMAP06454 111 aaKnown RBP5.02□□□□□ -1.61
CD44-226ENST00000527889 CELA3AP09093 270 aa5.02□□□□□ -1.61
CD44-226ENST00000527889 SDSP20132 328 aa5.02□□□□□ -1.61
CD44-226ENST00000527889 LIG3P49916 1009 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms