RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 CD3EP07766 207 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 GSTM1P09488 218 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 TRHRP34981 398 aaPredicted RBP7.44□□□□□ -1.22
CD44-223ENST00000526553 TIGD5Q53EQ6 642 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 CYP2R1Q6VVX0 501 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 CRACR2BQ8N4Y2 399 aaPredicted RBP7.44□□□□□ -1.22
CD44-223ENST00000526553 MICAL1Q8TDZ2 1067 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 ARMC5Q96C12 935 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 FCRL3Q96P31 734 aaPredicted RBP7.44□□□□□ -1.22
CD44-223ENST00000526553 C19orf44Q9H6X5 657 aa7.44□□□□□ -1.22
CD44-223ENST00000526553 CWC22Q9HCG8 908 aaKnown RBP7.44□□□□□ -1.22
CD44-223ENST00000526553 NOTOA8MTQ0 251 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 SUSD5O60279 629 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 GJB6O95452 261 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 ATP2B1P20020 1258 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 CEBPAP49715 358 aaPredicted RBP7.43□□□□□ -1.22
CD44-223ENST00000526553 AMPD2Q01433 879 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 DDR2Q16832 855 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 MRM1Q6IN84 353 aaKnown RBP7.43□□□□□ -1.22
CD44-223ENST00000526553 POMZP3Q6PJE2 187 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 CEP128Q6ZU80 1094 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 NPM2Q86SE8 214 aaKnown RBP7.43□□□□□ -1.22
CD44-223ENST00000526553 BVESQ8NE79 360 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 RNF32Q9H0A6 362 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 AKT3Q9Y243 479 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 GPR55Q9Y2T6 319 aaPredicted RBP7.43□□□□□ -1.22
CD44-223ENST00000526553 EMC9Q9Y3B6 208 aa7.43□□□□□ -1.22
CD44-223ENST00000526553 A0A1W2PQ45 241 aaPredicted RBP7.42□□□□□ -1.22
CD44-223ENST00000526553 A0A1W2PQY0 241 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 AURKAO14965 403 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 IFNGR1P15260 489 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 RAB33AQ14088 237 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 SLC14A2Q15849 920 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 RCSD1Q6JBY9 416 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 SLCO6A1Q86UG4 719 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 NLRX1Q86UT6 975 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 CKAP2LQ8IYA6 745 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 CELF2-AS1Q8N7Q2 184 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 NAT16Q8N8M0 369 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 EPN3Q9H201 632 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.42□□□□□ -1.22
CD44-223ENST00000526553 GPR160Q9UJ42 338 aa7.42□□□□□ -1.22
CD44-223ENST00000526553 PSPNO60542 156 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 RTP1P59025 263 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 NBPF6Q5VWK0 638 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 EEF1DP3Q658K8 133 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 GALNT18Q6P9A2 607 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 MPZL3Q6UWV2 235 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 EEPD1Q7L9B9 569 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 TRIM59Q8IWR1 403 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 TMEM52Q8NDY8 209 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 SHISA4Q96DD7 197 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 LIN37Q96GY3 246 aaPredicted RBP7.41□□□□□ -1.22
CD44-223ENST00000526553 NBPF4Q96M43 638 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 MCMBPQ9BTE3 642 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 SLC6A17Q9H1V8 727 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 YBX2Q9Y2T7 364 aaKnown RBP7.41□□□□□ -1.22
CD44-223ENST00000526553 BACE2Q9Y5Z0 518 aa7.41□□□□□ -1.22
CD44-223ENST00000526553 WTIPA6NIX2 430 aaPredicted RBP7.4□□□□□ -1.22
CD44-223ENST00000526553 STXBP3O00186 592 aa7.4□□□□□ -1.22
CD44-223ENST00000526553 NOP56O00567 594 aaKnown RBP7.4□□□□□ -1.22
CD44-223ENST00000526553 VAMP4O75379 141 aa7.4□□□□□ -1.22
CD44-223ENST00000526553 TXKP42681 527 aa7.4□□□□□ -1.22
CD44-223ENST00000526553 SF3A1Q15459 793 aaKnown RBP7.4□□□□□ -1.22
CD44-223ENST00000526553 HSF5Q4G112 596 aaPredicted RBP7.4□□□□□ -1.22
CD44-223ENST00000526553 HLA-DQA1Q5Y7H0 255 aa7.4□□□□□ -1.22
CD44-223ENST00000526553 MRGPRX3Q96LB0 322 aa7.4□□□□□ -1.22
CD44-223ENST00000526553 PTCHD1Q96NR3 888 aa7.4□□□□□ -1.22
CD44-223ENST00000526553 KRTAP4-8Q9BYQ9 185 aa7.4□□□□□ -1.22
CD44-223ENST00000526553 CRTAC1Q9NQ79 661 aa7.4□□□□□ -1.22
CD44-223ENST00000526553 TAF6LQ9Y6J9 622 aa7.4□□□□□ -1.22
CD44-223ENST00000526553 LRRC10BA6NIK2 292 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 KCNH1O95259 989 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 EFEMP2O95967 443 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 DPY19L1Q2PZI1 675 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 SV2CQ496J9 727 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 OGFOD2Q6N063 350 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 IRF2BP1Q8IU81 584 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 POU5F2Q8N7G0 328 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 INTS4Q96HW7 963 aaKnown RBP7.39□□□□□ -1.23
CD44-223ENST00000526553 HIRIP3Q9BW71 556 aaPredicted RBP7.39□□□□□ -1.23
CD44-223ENST00000526553 TRIM55Q9BYV6 548 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 ST7Q9NRC1 585 aa7.39□□□□□ -1.23
CD44-223ENST00000526553 TBC1D8O95759 1140 aa7.38□□□□□ -1.23
CD44-223ENST00000526553 MLANAQ16655 118 aa7.38□□□□□ -1.23
CD44-223ENST00000526553 SLC10A6Q3KNW5 377 aa7.38□□□□□ -1.23
CD44-223ENST00000526553 ZNF227Q86WZ6 799 aa7.38□□□□□ -1.23
CD44-223ENST00000526553 KSR1Q8IVT5 923 aa7.38□□□□□ -1.23
CD44-223ENST00000526553 PPP1R14AQ96A00 147 aa7.38□□□□□ -1.23
CD44-223ENST00000526553 JMJD8Q96S16 334 aa7.38□□□□□ -1.23
CD44-223ENST00000526553 PLCD4Q9BRC7 762 aa7.38□□□□□ -1.23
CD44-223ENST00000526553 ACSL6Q9UKU0 697 aa7.38□□□□□ -1.23
CD44-223ENST00000526553 C2orf71A6NGG8 1288 aa7.37□□□□□ -1.23
CD44-223ENST00000526553 PNLIPP16233 465 aa7.37□□□□□ -1.23
CD44-223ENST00000526553 GTF2F1P35269 517 aaKnown RBP eCLIP7.37□□□□□ -1.23
CD44-223ENST00000526553 SEPHS1P49903 392 aa7.37□□□□□ -1.23
CD44-223ENST00000526553 GTF2IRD2BQ6EKJ0 949 aa7.37□□□□□ -1.23
CD44-223ENST00000526553 PRR23BQ6ZRT6 265 aa7.37□□□□□ -1.23
CD44-223ENST00000526553 GTF2IRD2Q86UP8 949 aa7.37□□□□□ -1.23
CD44-223ENST00000526553 NKX2-4Q9H2Z4 354 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms