RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 ZNF648Q5T619 568 aaPredicted RBP9.13□□□□□ -0.95
SF3B1-212ENST00000496458 C6orf15Q6UXA7 325 aaPredicted RBP9.13□□□□□ -0.95
SF3B1-212ENST00000496458 NSUN3Q9H649 340 aaKnown RBP9.13□□□□□ -0.95
SF3B1-212ENST00000496458 CWC22Q9HCG8 908 aaKnown RBP9.13□□□□□ -0.95
SF3B1-212ENST00000496458 CGGBP1Q9UFW8 167 aaPredicted RBP9.13□□□□□ -0.95
SF3B1-212ENST00000496458 B2RBV5 119 aa9.12□□□□□ -0.95
SF3B1-212ENST00000496458 FARP2O94887 1054 aaPredicted RBP9.12□□□□□ -0.95
SF3B1-212ENST00000496458 IFNGR1P15260 489 aa9.12□□□□□ -0.95
SF3B1-212ENST00000496458 NOP2P46087 812 aaKnown RBP9.12□□□□□ -0.95
SF3B1-212ENST00000496458 NCAPHQ15003 741 aa9.12□□□□□ -0.95
SF3B1-212ENST00000496458 SIRT2Q8IXJ6 389 aa9.12□□□□□ -0.95
SF3B1-212ENST00000496458 SHISA4Q96DD7 197 aa9.12□□□□□ -0.95
SF3B1-212ENST00000496458 FCRL3Q96P31 734 aaPredicted RBP9.12□□□□□ -0.95
SF3B1-212ENST00000496458 GMLQ99445 158 aa9.12□□□□□ -0.95
SF3B1-212ENST00000496458 APEX2Q9UBZ4 518 aa9.12□□□□□ -0.95
SF3B1-212ENST00000496458 YBX2Q9Y2T7 364 aaKnown RBP9.12□□□□□ -0.95
SF3B1-212ENST00000496458 SNX17Q15036 470 aa9.11□□□□□ -0.95
SF3B1-212ENST00000496458 NAALADL2Q58DX5 795 aa9.11□□□□□ -0.95
SF3B1-212ENST00000496458 NLRX1Q86UT6 975 aa9.11□□□□□ -0.95
SF3B1-212ENST00000496458 INTS4Q96HW7 963 aaKnown RBP9.11□□□□□ -0.95
SF3B1-212ENST00000496458 PLCD4Q9BRC7 762 aa9.11□□□□□ -0.95
SF3B1-212ENST00000496458 KRTAP9-2Q9BYQ4 174 aa9.11□□□□□ -0.95
SF3B1-212ENST00000496458 SLC6A17Q9H1V8 727 aa9.11□□□□□ -0.95
SF3B1-212ENST00000496458 TAF6LQ9Y6J9 622 aa9.11□□□□□ -0.95
SF3B1-212ENST00000496458 VAMP4O75379 141 aa9.1□□□□□ -0.95
SF3B1-212ENST00000496458 CEBPAP49715 358 aaPredicted RBP9.1□□□□□ -0.95
SF3B1-212ENST00000496458 DPY19L1Q2PZI1 675 aa9.1□□□□□ -0.95
SF3B1-212ENST00000496458 HSF5Q4G112 596 aaPredicted RBP9.1□□□□□ -0.95
SF3B1-212ENST00000496458 FAM178BQ8IXR5 827 aa9.1□□□□□ -0.95
SF3B1-212ENST00000496458 ARHGEF39Q8N4T4 335 aa9.1□□□□□ -0.95
SF3B1-212ENST00000496458 TMEM52Q8NDY8 209 aa9.1□□□□□ -0.95
SF3B1-212ENST00000496458 MCMBPQ9BTE3 642 aa9.1□□□□□ -0.95
SF3B1-212ENST00000496458 EPB41L4BQ9H329 900 aa9.1□□□□□ -0.95
SF3B1-212ENST00000496458 STXBP3O00186 592 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 FGF10O15520 208 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-212ENST00000496458 DDAH1O94760 285 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 NAT2P11245 290 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 MESP2Q0VG99 397 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 KIR3DS1Q14943 382 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 SLCO6A1Q86UG4 719 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 ZNF513Q8N8E2 541 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-212ENST00000496458 MICAL1Q8TDZ2 1067 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 HNRNPLLQ8WVV9 542 aaKnown RBP9.09□□□□□ -0.95
SF3B1-212ENST00000496458 PPP1R14AQ96A00 147 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 RCC1LQ96I51 464 aaKnown RBP9.09□□□□□ -0.95
SF3B1-212ENST00000496458 APBA2Q99767 749 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 KCNK12Q9HB15 430 aa9.09□□□□□ -0.95
SF3B1-212ENST00000496458 DCP1AQ9NPI6 582 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-212ENST00000496458 PDE6BP35913 854 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 AMPD2Q01433 879 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 FXNQ16595 210 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 GALNT18Q6P9A2 607 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 CYP2R1Q6VVX0 501 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 KSR1Q8IVT5 923 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 FAM84AQ96KN4 292 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 JMJD8Q96S16 334 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 GOLGA2P5Q9HBQ8 144 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 AKT3Q9Y243 479 aa9.08□□□□□ -0.96
SF3B1-212ENST00000496458 R3HCC1Q9Y3T6 440 aaKnown RBP9.08□□□□□ -0.96
SF3B1-212ENST00000496458 A0A1W2PQ45 241 aaPredicted RBP9.07□□□□□ -0.96
SF3B1-212ENST00000496458 A0A1W2PQY0 241 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 WTIPA6NIX2 430 aaPredicted RBP9.07□□□□□ -0.96
SF3B1-212ENST00000496458 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.07□□□□□ -0.96
SF3B1-212ENST00000496458 AURKAO14965 403 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 C8AP07357 584 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 ZNF143P52747 638 aaPredicted RBP9.07□□□□□ -0.96
SF3B1-212ENST00000496458 GRB10Q13322 594 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 ADGRF1Q5T601 910 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 ANKS3Q6ZW76 656 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 IRF2BP1Q8IU81 584 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 PTCHD1Q96NR3 888 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 SLC38A3Q99624 504 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 LGR4Q9BXB1 951 aa9.07□□□□□ -0.96
SF3B1-212ENST00000496458 KCNH1O95259 989 aa9.06□□□□□ -0.96
SF3B1-212ENST00000496458 HLA-DQA1Q5Y7H0 255 aa9.06□□□□□ -0.96
SF3B1-212ENST00000496458 MRM1Q6IN84 353 aaKnown RBP9.06□□□□□ -0.96
SF3B1-212ENST00000496458 JAMLQ86YT9 394 aa9.06□□□□□ -0.96
SF3B1-212ENST00000496458 FBXO15Q8NCQ5 510 aaPredicted RBP9.06□□□□□ -0.96
SF3B1-212ENST00000496458 BVESQ8NE79 360 aa9.06□□□□□ -0.96
SF3B1-212ENST00000496458 NUP43Q8NFH3 380 aa9.06□□□□□ -0.96
SF3B1-212ENST00000496458 KRTAP4-12Q9BQ66 201 aa9.06□□□□□ -0.96
SF3B1-212ENST00000496458 CRTAC1Q9NQ79 661 aa9.06□□□□□ -0.96
SF3B1-212ENST00000496458 IMPACTQ9P2X3 320 aa9.06□□□□□ -0.96
SF3B1-212ENST00000496458 KRTAP9-6A0A140TA67 174 aa9.05□□□□□ -0.96
SF3B1-212ENST00000496458 NOP56O00567 594 aaKnown RBP9.05□□□□□ -0.96
SF3B1-212ENST00000496458 SUSD5O60279 629 aa9.05□□□□□ -0.96
SF3B1-212ENST00000496458 PRKCAP17252 672 aa9.05□□□□□ -0.96
SF3B1-212ENST00000496458 RCSD1Q6JBY9 416 aa9.05□□□□□ -0.96
SF3B1-212ENST00000496458 ZNF605Q86T29 641 aa9.05□□□□□ -0.96
SF3B1-212ENST00000496458 CRACR2BQ8N4Y2 399 aaPredicted RBP9.05□□□□□ -0.96
SF3B1-212ENST00000496458 CELF2-AS1Q8N7Q2 184 aa9.05□□□□□ -0.96
SF3B1-212ENST00000496458 EMC9Q9Y3B6 208 aa9.05□□□□□ -0.96
SF3B1-212ENST00000496458 BACE2Q9Y5Z0 518 aa9.05□□□□□ -0.96
SF3B1-212ENST00000496458 GJB6O95452 261 aa9.04□□□□□ -0.96
SF3B1-212ENST00000496458 PNLIPP16233 465 aa9.04□□□□□ -0.96
SF3B1-212ENST00000496458 SDHBP21912 280 aa9.04□□□□□ -0.96
SF3B1-212ENST00000496458 SEPHS1P49903 392 aa9.04□□□□□ -0.96
SF3B1-212ENST00000496458 ZNF124Q15973 351 aa9.04□□□□□ -0.96
SF3B1-212ENST00000496458 SV2CQ496J9 727 aa9.04□□□□□ -0.96
SF3B1-212ENST00000496458 EEF1DP3Q658K8 133 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms