RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 DNAJC14Q6Y2X3 702 aaPredicted RBP7.39□□□□□ -1.23
VPS50-219ENST00000495039 GGNQ86UU5 652 aa7.39□□□□□ -1.23
VPS50-219ENST00000495039 PRR13Q9NZ81 148 aa7.39□□□□□ -1.23
VPS50-219ENST00000495039 IMPACTQ9P2X3 320 aa7.39□□□□□ -1.23
VPS50-219ENST00000495039 FBXL21Q9UKT6 434 aa7.39□□□□□ -1.23
VPS50-219ENST00000495039 GREM1O60565 184 aa7.38□□□□□ -1.23
VPS50-219ENST00000495039 VAV1P15498 845 aa7.38□□□□□ -1.23
VPS50-219ENST00000495039 PFKLP17858 780 aa7.38□□□□□ -1.23
VPS50-219ENST00000495039 CTSKP43235 329 aa7.38□□□□□ -1.23
VPS50-219ENST00000495039 MAPKAPK2P49137 400 aa7.38□□□□□ -1.23
VPS50-219ENST00000495039 NR1I3Q14994 352 aa7.38□□□□□ -1.23
VPS50-219ENST00000495039 PLEKHN1Q494U1 663 aaPredicted RBP7.38□□□□□ -1.23
VPS50-219ENST00000495039 SPATS1Q496A3 300 aa7.38□□□□□ -1.23
VPS50-219ENST00000495039 ZC3H14Q6PJT7 736 aaKnown RBP7.38□□□□□ -1.23
VPS50-219ENST00000495039 TP53I13Q8NBR0 393 aaPredicted RBP7.38□□□□□ -1.23
VPS50-219ENST00000495039 COPRSQ9NQ92 184 aa7.38□□□□□ -1.23
VPS50-219ENST00000495039 A0A1W2PQ27 194 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 A0A1W2PQ64 194 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 A0A1W2PQC6 194 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 A0A1W2PQD8 194 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 KCNC1P48547 511 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 CEBPAP49715 358 aaPredicted RBP7.37□□□□□ -1.23
VPS50-219ENST00000495039 PLP2Q04941 152 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 EFEMP1Q12805 493 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 CRTC3Q6UUV7 619 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 TMEM192Q8IY95 271 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 REXO1Q8N1G1 1221 aaKnown RBP7.37□□□□□ -1.23
VPS50-219ENST00000495039 JMJD8Q96S16 334 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 AP5S1Q9NUS5 200 aa7.37□□□□□ -1.23
VPS50-219ENST00000495039 IRS2Q9Y4H2 1338 aa7.36□□□□□ -1.23
VPS50-219ENST00000495039 FFAR3O14843 346 aa7.36□□□□□ -1.23
VPS50-219ENST00000495039 NME1P15531 152 aaKnown RBP7.36□□□□□ -1.23
VPS50-219ENST00000495039 IGFBP6P24592 240 aaPredicted RBP7.36□□□□□ -1.23
VPS50-219ENST00000495039 CRKP46108 304 aa7.36□□□□□ -1.23
VPS50-219ENST00000495039 ZNF200P98182 395 aaPredicted RBP7.36□□□□□ -1.23
VPS50-219ENST00000495039 AUHQ13825 339 aaKnown RBP7.36□□□□□ -1.23
VPS50-219ENST00000495039 LRRFIP1Q32MZ4 808 aaKnown RBP7.36□□□□□ -1.23
VPS50-219ENST00000495039 SLC6A18Q96N87 628 aa7.36□□□□□ -1.23
VPS50-219ENST00000495039 BDH2Q9BUT1 245 aa7.36□□□□□ -1.23
VPS50-219ENST00000495039 TNFRSF10CO14798 259 aa7.35□□□□□ -1.23
VPS50-219ENST00000495039 GSNP06396 782 aa7.35□□□□□ -1.23
VPS50-219ENST00000495039 TARBP2Q15633 366 aaKnown RBP7.35□□□□□ -1.23
VPS50-219ENST00000495039 GK5Q6ZS86 529 aa7.35□□□□□ -1.23
VPS50-219ENST00000495039 NAT16Q8N8M0 369 aa7.35□□□□□ -1.23
VPS50-219ENST00000495039 ZNF296Q8WUU4 475 aaPredicted RBP7.35□□□□□ -1.23
VPS50-219ENST00000495039 DSCC1Q9BVC3 393 aa7.35□□□□□ -1.23
VPS50-219ENST00000495039 MEIS3P2A8K0S8 358 aa7.34□□□□□ -1.23
VPS50-219ENST00000495039 LIMS1P48059 325 aa7.34□□□□□ -1.23
VPS50-219ENST00000495039 ZNF165P49910 485 aa7.34□□□□□ -1.23
VPS50-219ENST00000495039 SLURP1P55000 103 aa7.34□□□□□ -1.23
VPS50-219ENST00000495039 CLCQ05315 142 aa7.34□□□□□ -1.23
VPS50-219ENST00000495039 SEZ6Q53EL9 994 aa7.34□□□□□ -1.23
VPS50-219ENST00000495039 HLA-DQA1Q5Y7H0 255 aa7.34□□□□□ -1.23
VPS50-219ENST00000495039 TMEM52Q8NDY8 209 aa7.34□□□□□ -1.23
VPS50-219ENST00000495039 CYBBP04839 570 aa7.33□□□□□ -1.24
VPS50-219ENST00000495039 MCM4P33991 863 aa7.33□□□□□ -1.24
VPS50-219ENST00000495039 MVKQ03426 396 aa7.33□□□□□ -1.24
VPS50-219ENST00000495039 APOBRQ0VD83 1088 aa7.33□□□□□ -1.24
VPS50-219ENST00000495039 RTP5Q14D33 572 aa7.33□□□□□ -1.24
VPS50-219ENST00000495039 ZXDCQ2QGD7 858 aaPredicted RBP7.33□□□□□ -1.24
VPS50-219ENST00000495039 RTP2Q5QGT7 225 aa7.33□□□□□ -1.24
VPS50-219ENST00000495039 CWF19L1Q69YN2 538 aaKnown RBP7.33□□□□□ -1.24
VPS50-219ENST00000495039 PAQR3Q6TCH7 311 aa7.33□□□□□ -1.24
VPS50-219ENST00000495039 JAMLQ86YT9 394 aa7.33□□□□□ -1.24
VPS50-219ENST00000495039 A0A1W2PQJ5 194 aa7.32□□□□□ -1.24
VPS50-219ENST00000495039 SRGAP3O43295 1099 aa7.32□□□□□ -1.24
VPS50-219ENST00000495039 GSTM1P09488 218 aa7.32□□□□□ -1.24
VPS50-219ENST00000495039 MSL3P1P0C860 447 aa7.32□□□□□ -1.24
VPS50-219ENST00000495039 TAGLNQ01995 201 aaKnown RBP7.32□□□□□ -1.24
VPS50-219ENST00000495039 CYP2R1Q6VVX0 501 aa7.32□□□□□ -1.24
VPS50-219ENST00000495039 DHRS1Q96LJ7 313 aa7.32□□□□□ -1.24
VPS50-219ENST00000495039 UBP1Q9NZI7 540 aa7.32□□□□□ -1.24
VPS50-219ENST00000495039 CNOT11Q9UKZ1 510 aaKnown RBP7.32□□□□□ -1.24
VPS50-219ENST00000495039 DBHP09172 617 aa7.31□□□□□ -1.24
VPS50-219ENST00000495039 ZFYVE27Q5T4F4 411 aa7.31□□□□□ -1.24
VPS50-219ENST00000495039 C7orf61Q8IZ16 206 aa7.31□□□□□ -1.24
VPS50-219ENST00000495039 SLC9A7Q96T83 725 aa7.31□□□□□ -1.24
VPS50-219ENST00000495039 SLC12A9Q9BXP2 914 aa7.31□□□□□ -1.24
VPS50-219ENST00000495039 ANTXR1Q9H6X2 564 aa7.31□□□□□ -1.24
VPS50-219ENST00000495039 USP40Q9NVE5 1235 aa7.31□□□□□ -1.24
VPS50-219ENST00000495039 SUCOQ9UBS9 1254 aaKnown RBP7.31□□□□□ -1.24
VPS50-219ENST00000495039 SUSD2Q9UGT4 822 aa7.31□□□□□ -1.24
VPS50-219ENST00000495039 PRICKLE3O43900 615 aaPredicted RBP7.3□□□□□ -1.24
VPS50-219ENST00000495039 VWA3BQ502W6 1294 aa7.3□□□□□ -1.24
VPS50-219ENST00000495039 BICRALQ6AI39 1079 aa7.3□□□□□ -1.24
VPS50-219ENST00000495039 HS2ST1Q7LGA3 356 aa7.3□□□□□ -1.24
VPS50-219ENST00000495039 LSRQ86X29 649 aaPredicted RBP7.3□□□□□ -1.24
VPS50-219ENST00000495039 CCDC144CPQ8IYA2 1237 aa7.3□□□□□ -1.24
VPS50-219ENST00000495039 TMPRSS5Q9H3S3 457 aa7.3□□□□□ -1.24
VPS50-219ENST00000495039 PDLIM7Q9NR12 457 aa7.3□□□□□ -1.24
VPS50-219ENST00000495039 ADAMTS1Q9UHI8 967 aa7.3□□□□□ -1.24
VPS50-219ENST00000495039 GGT7Q9UJ14 662 aa7.3□□□□□ -1.24
VPS50-219ENST00000495039 FAN1Q9Y2M0 1017 aa7.3□□□□□ -1.24
VPS50-219ENST00000495039 FBLN1P23142 703 aa7.29□□□□□ -1.24
VPS50-219ENST00000495039 FOXO4P98177 505 aa7.29□□□□□ -1.24
VPS50-219ENST00000495039 UBXN11Q5T124 520 aa7.29□□□□□ -1.24
VPS50-219ENST00000495039 LIPIQ6XZB0 460 aa7.29□□□□□ -1.24
VPS50-219ENST00000495039 FNIP1Q8TF40 1166 aa7.29□□□□□ -1.24
VPS50-219ENST00000495039 SRRTQ9BXP5 876 aaKnown RBP7.29□□□□□ -1.24
VPS50-219ENST00000495039 RNF38Q9H0F5 515 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms