RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 ARMCX6Q7L4S7 300 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 METTL16Q86W50 562 aaKnown RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 KIAA0825Q8IV33 1275 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 FOXP4Q8IVH2 680 aaPredicted RBP4.7□□□□□ -1.66
VPS50-210ENST00000471188 GRAMD1CQ8IYS0 662 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 RDH13Q8NBN7 331 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 NKX2-3Q8TAU0 364 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 SEC16BQ96JE7 1060 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 ALS2CR12Q96Q35 445 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 CHP1Q99653 195 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 KCNH3Q9ULD8 1083 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 STK38LQ9Y2H1 464 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 NDUFB9Q9Y6M9 179 aa4.7□□□□□ -1.66
VPS50-210ENST00000471188 SLIT1O75093 1534 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 TRPM2O94759 1503 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 A0A1B0GVG6 124 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 ESYT3A0FGR9 886 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 SPDYE3A6NKU9 549 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 B4DLN1 442 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 PDE2AO00408 941 aaPredicted RBP4.69□□□□□ -1.66
VPS50-210ENST00000471188 KRT86O43790 486 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 MGRN1O60291 552 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 TAF5LO75529 589 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 CYP21A2P08686 494 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 ATP4AP20648 1035 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 BMP6P22004 513 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 DNAJB2P25686 324 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 CXCR5P32302 372 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 G3BP1Q13283 466 aaKnown RBP eCLIP4.69□□□□□ -1.66
VPS50-210ENST00000471188 CUL3Q13618 768 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 HLTFQ14527 1009 aaKnown RBP eCLIP4.69□□□□□ -1.66
VPS50-210ENST00000471188 SLMAPQ14BN4 828 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 QPCTQ16769 361 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 C1QTNF12Q5T7M4 302 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 C8orf74Q6P047 294 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 DHX32Q7L7V1 743 aaKnown RBP4.69□□□□□ -1.66
VPS50-210ENST00000471188 SLF2Q8IX21 1173 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 SYCP3Q8IZU3 236 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 FAM81AQ8TBF8 368 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 ENOX1Q8TC92 643 aaKnown RBP4.69□□□□□ -1.66
VPS50-210ENST00000471188 AGAP11Q8TF27 550 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 TEKT4Q8WW24 435 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 ZNF570Q96NI8 536 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 RMI1Q9H9A7 625 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 C9orf78Q9NZ63 289 aaPredicted RBP4.69□□□□□ -1.66
VPS50-210ENST00000471188 ZFATQ9P243 1243 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 MAN1B1Q9UKM7 699 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 LEMD3Q9Y2U8 911 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 QRICH2Q9H0J4 1663 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 MAP3K5Q99683 1374 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 CPSF1Q10570 1443 aaKnown RBP4.69□□□□□ -1.66
VPS50-210ENST00000471188 PHF20L1A8MW92 1017 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 POLR2DO15514 142 aaKnown RBP4.69□□□□□ -1.66
VPS50-210ENST00000471188 FOXO3O43524 673 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 LUC7L3O95232 432 aaKnown RBP4.69□□□□□ -1.66
VPS50-210ENST00000471188 NDUFA10O95299 355 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 GYPCP04921 128 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 PAFAH1B1P43034 410 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 MAP3K12Q12852 859 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 MTA1Q13330 715 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 XRCC4Q13426 336 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 POSTNQ15063 836 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 TAF7Q15545 349 aaPredicted RBP4.69□□□□□ -1.66
VPS50-210ENST00000471188 EMBQ6PCB8 327 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 SHC4Q6S5L8 630 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 BRAPQ7Z569 592 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 NME9Q86XW9 330 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 MLKLQ8NB16 471 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 ACSBG1Q96GR2 724 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 HAUS4Q9H6D7 363 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 PHAXQ9H814 394 aaKnown RBP4.69□□□□□ -1.66
VPS50-210ENST00000471188 INCENPQ9NQS7 918 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 ABHD10Q9NUJ1 306 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 SMARCAL1Q9NZC9 954 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 ANAPC4Q9UJX5 808 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 NFU1Q9UMS0 254 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 ZNF232Q9UNY5 417 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 KDRP35968 1356 aa4.69□□□□□ -1.66
VPS50-210ENST00000471188 ARHGAP23Q9P227 1491 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 A0A1B0GTH6 734 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 RASSF10A6NK89 507 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 HGSO14964 777 aaPredicted RBP4.68□□□□□ -1.66
VPS50-210ENST00000471188 CHGBP05060 677 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 LINGO3P0C6S8 592 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 EPB41P11171 864 aaKnown RBP4.68□□□□□ -1.66
VPS50-210ENST00000471188 AFMP43652 599 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 PAK2Q13177 524 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 MFSD4BQ5TF39 518 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 C6orf89Q6UWU4 347 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 ANKS4BQ8N8V4 417 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 CCHCR1Q8TD31 782 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 COG3Q96JB2 828 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 ATP6V1G3Q96LB4 118 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 ALDH8A1Q9H2A2 487 aaPredicted RBP4.68□□□□□ -1.66
VPS50-210ENST00000471188 KDM4CQ9H3R0 1056 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 EBF2Q9HAK2 575 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 PANK4Q9NVE7 773 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 PCDHB3Q9Y5E6 796 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 ZMYM6O95789 1325 aa4.68□□□□□ -1.66
VPS50-210ENST00000471188 MYH8P13535 1937 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms