RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 SH3TC2Q8TF17 1288 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 CCDC140Q96MF4 163 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 SLC26A8Q96RN1 970 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 CDC6Q99741 560 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 NKX2-4Q9H2Z4 354 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 CARS2Q9HA77 564 aaKnown RBP6.18□□□□□ -1.42
VPS41-210ENST00000462429 ARHGEF4Q9NR80 690 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 GPR55Q9Y2T6 319 aaPredicted RBP6.18□□□□□ -1.42
VPS41-210ENST00000462429 TBX22Q9Y458 520 aa6.18□□□□□ -1.42
VPS41-210ENST00000462429 AURKAO14965 403 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 TBX1O43435 398 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 ADCY3O60266 1144 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 GSTM1P09488 218 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 FAM153BP0C7A2 387 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 FGFR1P11362 822 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 HOXC12P31275 282 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 CD96P40200 585 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 TEKQ02763 1124 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 ZP2Q05996 745 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 RNPC3Q96LT9 517 aaKnown RBP6.17□□□□□ -1.42
VPS41-210ENST00000462429 SLC12A9Q9BXP2 914 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 CYP26B1Q9NR63 512 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 BACE2Q9Y5Z0 518 aa6.17□□□□□ -1.42
VPS41-210ENST00000462429 MRPL42Q9Y6G3 142 aaKnown RBP6.17□□□□□ -1.42
VPS41-210ENST00000462429 CCDC163A0A0D9SF12 145 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 STXBP3O00186 592 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 FKTNO75072 461 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 WNT11O96014 354 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 CPP00450 1065 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 SNRPB2P08579 225 aaKnown RBP6.16□□□□□ -1.42
VPS41-210ENST00000462429 RPL10P27635 214 aaKnown RBP6.16□□□□□ -1.42
VPS41-210ENST00000462429 KCNJ6P48051 423 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 LRP8Q14114 963 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 TMEM67Q5HYA8 995 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 ZNF574Q6ZN55 896 aaPredicted RBP6.16□□□□□ -1.42
VPS41-210ENST00000462429 SPRED2Q7Z698 418 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 KSR1Q8IVT5 923 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 AGBL5Q8NDL9 886 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 FCRL3Q96P31 734 aaPredicted RBP6.16□□□□□ -1.42
VPS41-210ENST00000462429 IER2Q9BTL4 223 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 CDADC1Q9BWV3 514 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 PTCH2Q9Y6C5 1203 aa6.16□□□□□ -1.42
VPS41-210ENST00000462429 TRBV23-1A0A0A0MS06 115 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 C2orf71A6NGG8 1288 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 PRODHO43272 600 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 SMARCA5O60264 1052 aaPredicted RBP6.15□□□□□ -1.42
VPS41-210ENST00000462429 CAPNS1P04632 268 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 PABPC1P11940 636 aaKnown RBP6.15□□□□□ -1.42
VPS41-210ENST00000462429 IFNGR1P15260 489 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 GRIA2P42262 883 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 SEPHS1P49903 392 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 GFRA1P56159 465 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 SCRN1Q12765 414 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 RTP2Q5QGT7 225 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 EEF1DP3Q658K8 133 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 SDE2Q6IQ49 451 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 RCSD1Q6JBY9 416 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 NSMFQ6X4W1 530 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 WAPLQ7Z5K2 1190 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 HOMER1Q86YM7 354 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 SCUBE1Q8IWY4 988 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 TP53INP2Q8IXH6 220 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 NAT16Q8N8M0 369 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 KCTD13Q8WZ19 329 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 CCDC120Q96HB5 630 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 MCMBPQ9BTE3 642 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 PAK6Q9NQU5 681 aaPredicted RBP6.15□□□□□ -1.42
VPS41-210ENST00000462429 AP5S1Q9NUS5 200 aa6.15□□□□□ -1.42
VPS41-210ENST00000462429 TRBV23OR9-2A0A075B6M9 112 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 SCO2A0A1W2PP80 73 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 SCG5P05408 212 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 FUT4P22083 530 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 MAP4K2Q12851 820 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 DUSP4Q13115 394 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 YOD1Q5VVQ6 348 aaPredicted RBP6.14□□□□□ -1.43
VPS41-210ENST00000462429 CYP2R1Q6VVX0 501 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 WFDC3Q8IUB2 231 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 APPBP2Q92624 585 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 COPS5Q92905 334 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 FCRL2Q96LA5 508 aaPredicted RBP6.14□□□□□ -1.43
VPS41-210ENST00000462429 ALPK1Q96QP1 1244 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 DHRS4Q9BTZ2 278 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 TMEM260Q9NX78 707 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 SLAMF8Q9P0V8 285 aa6.14□□□□□ -1.43
VPS41-210ENST00000462429 TMEM82A0PJX8 343 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 ENPP3O14638 875 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 FGF10O15520 208 aaPredicted RBP6.13□□□□□ -1.43
VPS41-210ENST00000462429 CDC45O75419 566 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 CLSTN1O94985 981 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 ECI1P42126 302 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 SUMO1P63165 101 aaKnown RBP6.13□□□□□ -1.43
VPS41-210ENST00000462429 SQSTM1Q13501 440 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 PLCL1Q15111 1095 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 SLC23A3Q6PIS1 610 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 TMEM145Q8NBT3 493 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 PI4K2BQ8TCG2 481 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 OSBP2Q969R2 916 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 KANSL2Q9H9L4 492 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 FANCLQ9NW38 375 aa6.13□□□□□ -1.43
VPS41-210ENST00000462429 ZNF281Q9Y2X9 895 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms