RNA–Protein interactions for RNA: ENST00000448012.6

NPIPB3-202, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 1 (best) BASIC

Gene NPIPB3, Length 1,216 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-202ENST00000448012 TCP11L1Q9NUJ3 509 aa12.9□□□□□ -0.34
NPIPB3-202ENST00000448012 ZHX1Q9UKY1 873 aaPredicted RBP12.9□□□□□ -0.34
NPIPB3-202ENST00000448012 RIPK3Q9Y572 518 aa12.9□□□□□ -0.34
NPIPB3-202ENST00000448012 A0A0G2JMZ2 1700 aa12.9□□□□□ -0.34
NPIPB3-202ENST00000448012 SYNGAP1Q96PV0 1343 aa12.89□□□□□ -0.35
NPIPB3-202ENST00000448012 CENPFP49454 3210 aa12.89□□□□□ -0.35
NPIPB3-202ENST00000448012 FXR1P51114 621 aaKnown RBP eCLIP12.89□□□□□ -0.35
NPIPB3-202ENST00000448012 LRRC26Q2I0M4 334 aa12.89□□□□□ -0.35
NPIPB3-202ENST00000448012 TRERF1Q96PN7 1200 aa12.89□□□□□ -0.35
NPIPB3-202ENST00000448012 DSCC1Q9BVC3 393 aa12.89□□□□□ -0.35
NPIPB3-202ENST00000448012 UBE2OQ9C0C9 1292 aaKnown RBP12.89□□□□□ -0.35
NPIPB3-202ENST00000448012 CCPG1Q9ULG6 757 aa12.89□□□□□ -0.35
NPIPB3-202ENST00000448012 ATP11BQ9Y2G3 1177 aa12.89□□□□□ -0.35
NPIPB3-202ENST00000448012 ASB14A6NK59 587 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 IGHA2P01877 340 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 ADCYAP1R1P41586 468 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 RTP1P59025 263 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 IRX6P78412 446 aaPredicted RBP12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 LRRC41Q15345 812 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 SYDE2Q5VT97 1194 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 MAMDC4Q6UXC1 1216 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 NOL8Q76FK4 1167 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 MPHOSPH6Q99547 160 aaKnown RBP12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 TMEM47Q9BQJ4 181 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 KRT23Q9C075 422 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 ABHD16BQ9H3Z7 469 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 CNNM2Q9H8M5 875 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 GPCPD1Q9NPB8 672 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 PRR12Q9ULL5 1215 aa12.88□□□□□ -0.35
NPIPB3-202ENST00000448012 DNAJC25-GNG10A0A024R161 153 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 ICAM1P05362 532 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 BMP8BP34820 402 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 TRDNQ13061 729 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 ACVR2BQ13705 512 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 GPATCH4Q5T3I0 446 aaKnown RBP12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 NSMFQ6X4W1 530 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 SLC39A5Q6ZMH5 540 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 NUP133Q8WUM0 1156 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 AGBL1Q96MI9 1066 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 UBAC1Q9BSL1 405 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 KAT14Q9H8E8 782 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 PRDM5Q9NQX1 630 aaPredicted RBP12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 GREB1LQ9C091 1923 aaPredicted RBP12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 FRMPD2Q68DX3 1309 aaPredicted RBP12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 RAD50Q92878 1312 aa12.87□□□□□ -0.35
NPIPB3-202ENST00000448012 PGK1P00558 417 aa12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 ZNF865P0CJ78 1059 aaPredicted RBP12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 SLC16A2P36021 539 aa12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 MAGEA10P43363 369 aaPredicted RBP12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 NOVP48745 357 aa12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 TTC22Q5TAA0 569 aa12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 DGKHQ86XP1 1220 aa12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 TBC1D10CQ8IV04 446 aa12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 FERMT2Q96AC1 680 aa12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 VTI1AQ96AJ9 217 aa12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 A1CFQ9NQ94 594 aaKnown RBP12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 ADD3Q9UEY8 706 aaKnown RBP12.86□□□□□ -0.35
NPIPB3-202ENST00000448012 B4DLN1 442 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 DHX16O60231 1041 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 KDM4AO75164 1064 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 DUSP11O75319 330 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 SNAI1O95863 264 aaPredicted RBP12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 PDHBP11177 359 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 TAL1P17542 331 aaPredicted RBP12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 MRPL12P52815 198 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 SNAP25P60880 206 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 ZNF543Q08ER8 600 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 BTNL9Q6UXG8 535 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 ARMCX2Q7L311 632 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 PCSK9Q8NBP7 692 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 GDF15Q99988 308 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 ZKSCAN3Q9BRR0 538 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 TSEN34Q9BSV6 310 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 RANBP17Q9H2T7 1088 aaKnown RBP12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 PHF24Q9UPV7 400 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 RLFQ13129 1914 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 NEDD4P46934 1319 aa12.85□□□□□ -0.35
NPIPB3-202ENST00000448012 ERICH2A1L162 156 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 PTPDC1A2A3K4 754 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 MOXD2PA6NHM9 499 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 B4E1Z4 1266 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 C6orf222P0C671 652 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 MDM2Q00987 491 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 TTBK2Q6IQ55 1244 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 CCDC144CPQ8IYA2 1237 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 TDHQ8IZJ6 230 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 FAM133AQ8N9E0 248 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 PNMA1Q8ND90 353 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 GLT1D1Q96MS3 346 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 ZSCAN10Q96SZ4 725 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 AP5M1Q9H0R1 490 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 PRO3102Q9H379 93 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 STARD7Q9NQZ5 370 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 TACC3Q9Y6A5 838 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 U3KPZ7 1027 aaPredicted RBP12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 ZNF536O15090 1300 aa12.84□□□□□ -0.35
NPIPB3-202ENST00000448012 DCDC2CA8MYV0 355 aa12.83□□□□□ -0.36
NPIPB3-202ENST00000448012 ZEB2O60315 1214 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms