RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 IRX3P78415 501 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 LRRC24Q50LG9 513 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 H2AFVQ71UI9 128 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 GPBP1Q86WP2 473 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 RDH13Q8NBN7 331 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 GABPB2Q8TAK5 448 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 ARHGEF2Q92974 986 aaKnown RBP12.6□□□□□ -0.39
PTPRF-203ENST00000372407 PPP1R12CQ9BZL4 782 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 MED4Q9NPJ6 270 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 ODF2LQ9ULJ1 636 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 PYCARDQ9ULZ3 195 aa12.6□□□□□ -0.39
PTPRF-203ENST00000372407 STK10O94804 968 aaKnown RBP12.59□□□□□ -0.39
PTPRF-203ENST00000372407 PCP11498 1178 aaKnown RBP12.59□□□□□ -0.39
PTPRF-203ENST00000372407 ZNF131P52739 623 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 GKAP1Q5VSY0 366 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-203ENST00000372407 TPH2Q8IWU9 490 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 SDR42E1Q8WUS8 393 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 GPR108Q9NPR9 543 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 CLIC4Q9Y696 253 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 GAS7O60861 476 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 TECP42680 631 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 TSNAXIP1Q2TAA8 658 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 CDC23Q9UJX2 597 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 CLEC11AQ9Y240 323 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 LOC102724428A0A0B4J2F2 783 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 GUCY2FP51841 1108 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 SIK1P57059 783 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 ZMYM1Q5SVZ6 1142 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 CDAN1Q8IWY9 1227 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 CHURC1Q8WUH1 139 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 VCX3BQ9H321 246 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 METTL14Q9HCE5 456 aaKnown RBP12.59□□□□□ -0.39
PTPRF-203ENST00000372407 TMOD4Q9NZQ9 345 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 RCOR1Q9UKL0 485 aa12.59□□□□□ -0.39
PTPRF-203ENST00000372407 KRIT1O00522 736 aa12.58□□□□□ -0.39
PTPRF-203ENST00000372407 NOP56O00567 594 aaKnown RBP12.58□□□□□ -0.39
PTPRF-203ENST00000372407 BUB1BO60566 1050 aaPredicted RBP12.58□□□□□ -0.39
PTPRF-203ENST00000372407 CD2BP2O95400 341 aaKnown RBP12.58□□□□□ -0.39
PTPRF-203ENST00000372407 ABCB4P21439 1286 aa12.58□□□□□ -0.39
PTPRF-203ENST00000372407 LONP1P36776 959 aaKnown RBP12.58□□□□□ -0.39
PTPRF-203ENST00000372407 TCP10Q12799 353 aa12.58□□□□□ -0.39
PTPRF-203ENST00000372407 GEN1Q17RS7 908 aa12.58□□□□□ -0.39
PTPRF-203ENST00000372407 FAM26FQ5R3K3 315 aa12.58□□□□□ -0.39
PTPRF-203ENST00000372407 MFSD14BQ5SR56 506 aa12.58□□□□□ -0.39
PTPRF-203ENST00000372407 CCDC24Q8N4L8 307 aa12.58□□□□□ -0.39
PTPRF-203ENST00000372407 PPANQ9NQ55 473 aaKnown RBP12.58□□□□□ -0.39
PTPRF-203ENST00000372407 POLR3EQ9NVU0 708 aa12.58□□□□□ -0.39
PTPRF-203ENST00000372407 PDE8BO95263 885 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 GNGT1P63211 74 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 PPARDQ03181 441 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 NEXMIFQ5QGS0 1516 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 IGSF1Q8N6C5 1336 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 IKBKBO14920 756 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 DAPK3O43293 454 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 ZBED4O75132 1171 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 RPN1P04843 607 aaKnown RBP12.58□□□□□ -0.4
PTPRF-203ENST00000372407 GBP1P32455 592 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 GYG1P46976 350 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 APOA5Q6Q788 366 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 BCAS4Q8TDM0 211 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 ANTXR1Q9H6X2 564 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 PSTPIP2Q9H939 334 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 LARSQ9P2J5 1176 aaKnown RBP12.58□□□□□ -0.4
PTPRF-203ENST00000372407 BAIAP2L1Q9UHR4 511 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 NCOA3Q9Y6Q9 1424 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 PPP6R2O75170 966 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 STX2P32856 288 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 GINS2Q9Y248 185 aa12.58□□□□□ -0.4
PTPRF-203ENST00000372407 DDAH1O94760 285 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 TNNI1P19237 187 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 RASSF2P50749 326 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 BCAMP50895 628 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 TAF12Q16514 161 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 NSUN7Q8NE18 718 aaKnown RBP12.57□□□□□ -0.4
PTPRF-203ENST00000372407 NRBP1Q9UHY1 535 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 COPB1P53618 953 aaKnown RBP12.57□□□□□ -0.4
PTPRF-203ENST00000372407 CLNS1AP54105 237 aaKnown RBP12.57□□□□□ -0.4
PTPRF-203ENST00000372407 GOLGA5Q8TBA6 731 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 P3H4Q92791 437 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 PLEKHA4Q9H4M7 779 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 AZI2Q9H6S1 392 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 MED23Q9ULK4 1368 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 I3L4J1 428 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 IFNB1P01574 187 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 TRAPPC10P48553 1259 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 CACTINQ8WUQ7 758 aaKnown RBP12.57□□□□□ -0.4
PTPRF-203ENST00000372407 SYMPKQ92797 1274 aaKnown RBP12.57□□□□□ -0.4
PTPRF-203ENST00000372407 RNF26Q9BY78 433 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-203ENST00000372407 FOXP1Q9H334 677 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-203ENST00000372407 GOLGA8KD6RF30 607 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 CDC25BP30305 580 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 CYP2J2P51589 502 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 CCDC38Q502W7 563 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 SRGAP1Q7Z6B7 1085 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 NLRX1Q86UT6 975 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 CCT6BQ92526 530 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 RNF34Q969K3 372 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 USP40Q9NVE5 1235 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 COL4A3BPQ9Y5P4 624 aa12.57□□□□□ -0.4
PTPRF-203ENST00000372407 LAMC1P11047 1609 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms