RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 HELLSQ9NRZ9 838 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 ORC6Q9Y5N6 252 aa11.17□□□□□ -0.62
CLIP1-202ENST00000358808 A6NJR5 290 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 PRDM1O75626 825 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 FOXD4Q12950 439 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-202ENST00000358808 ZNF772Q68DY9 489 aaPredicted RBP11.16□□□□□ -0.62
CLIP1-202ENST00000358808 CABP7Q86V35 215 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 CCDC24Q8N4L8 307 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 PLEKHA4Q9H4M7 779 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 MOSPD1Q9UJG1 213 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 TNNQ9UQP3 1299 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 ALAS1P13196 640 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 ADCY8P40145 1251 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 RASSF2P50749 326 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 PAK2Q13177 524 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 MYSM1Q5VVJ2 828 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 RSRC2Q7L4I2 434 aaKnown RBP11.16□□□□□ -0.62
CLIP1-202ENST00000358808 METTL23Q86XA0 190 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 MAPKAPK5Q8IW41 473 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 Q9H521 79 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 SLC8A2Q9UPR5 921 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 TMOD1P28289 359 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 MAGEA1P43355 309 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 CDC26Q8NHZ8 85 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 GRK7Q8WTQ7 553 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 CABS1Q96KC9 395 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 GCNAQ96QF7 691 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 MAD1L1Q9Y6D9 718 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 GPC4O75487 556 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 SEC24BO95487 1268 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 KSR1Q8IVT5 923 aa11.16□□□□□ -0.62
CLIP1-202ENST00000358808 EDC4Q6P2E9 1401 aaKnown RBP11.16□□□□□ -0.62
CLIP1-202ENST00000358808 SRGAP2BP0DMP2 458 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 ELMSAN1Q6PJG2 1045 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 POTEDQ86YR6 584 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 CERS3Q8IU89 383 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 N4BP2L2Q92802 583 aaPredicted RBP11.15□□□□□ -0.62
CLIP1-202ENST00000358808 LSM14BQ9BX40 385 aaKnown RBP11.15□□□□□ -0.62
CLIP1-202ENST00000358808 TAB2Q9NYJ8 693 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 MAP3K19Q56UN5 1328 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 TMEM191BP0C7N4 346 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 SERPINB6P35237 376 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 TNFAIP1Q13829 316 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 Q3C1V9 767 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 XKR9Q5GH70 373 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 MICAL1Q8TDZ2 1067 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 PCDHB13Q9Y5F0 798 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLIP1-202ENST00000358808 PHLDB3Q6NSJ2 640 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 TGFBRAP1Q8WUH2 860 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 MIS12Q9H081 205 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 RAB17Q9H0T7 212 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 C1orf112Q9NSG2 853 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 AMFRQ9UKV5 643 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 KCNH3Q9ULD8 1083 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 POLR2DO15514 142 aaKnown RBP11.15□□□□□ -0.62
CLIP1-202ENST00000358808 ASPHQ12797 758 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 DPP9Q86TI2 863 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 SNX21Q969T3 373 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 ALKBH8Q96BT7 664 aaKnown RBP11.15□□□□□ -0.62
CLIP1-202ENST00000358808 TTC1Q99614 292 aa11.15□□□□□ -0.62
CLIP1-202ENST00000358808 TACO1Q9BSH4 297 aaKnown RBP11.15□□□□□ -0.62
CLIP1-202ENST00000358808 STX1BP61266 288 aa11.15□□□□□ -0.63
CLIP1-202ENST00000358808 CFAP221Q4G0U5 840 aa11.15□□□□□ -0.63
CLIP1-202ENST00000358808 PRPF38AQ8NAV1 312 aaKnown RBP11.15□□□□□ -0.63
CLIP1-202ENST00000358808 CPSF3Q9UKF6 684 aaKnown RBP11.15□□□□□ -0.63
CLIP1-202ENST00000358808 FAN1Q9Y2M0 1017 aa11.15□□□□□ -0.63
CLIP1-202ENST00000358808 DIP2BQ9P265 1576 aa11.15□□□□□ -0.63
CLIP1-202ENST00000358808 RAD50Q92878 1312 aa11.15□□□□□ -0.63
CLIP1-202ENST00000358808 K7ENM7 598 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 RGS16O15492 202 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-202ENST00000358808 APOEP02649 317 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 ABCB4P21439 1286 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 SULF1Q8IWU6 871 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 CHURC1Q8WUH1 139 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 TMEM87BQ96K49 555 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 IWS1Q96ST2 819 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 RRAGDQ9NQL2 400 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-202ENST00000358808 KRT82Q9NSB4 513 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 TSKSQ9UJT2 592 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 KAT6BQ8WYB5 2073 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 RNF8O76064 485 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 PYGLP06737 847 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 NPR1P16066 1061 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 PDE6CP51160 858 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 FLAD1Q8NFF5 587 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 NELFBQ8WX92 580 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 AP5M1Q9H0R1 490 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 SLC52A2Q9HAB3 445 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 TEKT2Q9UIF3 430 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 CTDSPL2Q05D32 466 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 KRT71Q3SY84 523 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 HS1BP3Q53T59 392 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 KAZNQ674X7 775 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 CDKL2Q92772 493 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 METTL22Q9BUU2 404 aaPredicted RBP11.14□□□□□ -0.63
CLIP1-202ENST00000358808 RASSF4Q9H2L5 321 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 A0A1W2PP64 1363 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 H7C0C1 242 aa11.14□□□□□ -0.63
CLIP1-202ENST00000358808 BNIP3LO60238 219 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms