RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MMS22LQ6ZRQ5 1243 aa21.48■■□□□ 1.03
CCDC88B-202ENST00000356786 MAEAQ7L5Y9 396 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 ZNF496Q96IT1 587 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 ANKRD2Q9GZV1 360 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 ARMCX3Q9UH62 379 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 OPHN1O60890 802 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 BACH1O14867 736 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 SMIM24O75264 130 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 RASA3Q14644 834 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 TPTE2Q6XPS3 522 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 ZNF589Q86UQ0 364 aaPredicted RBP21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 BLIDQ8IZY5 108 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 SLC39A2Q9NP94 309 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 ARHGAP42A6NI28 874 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 HMGB2P26583 209 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 TFAP4Q01664 338 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 PPP2R5AQ15172 486 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 FAM47AQ5JRC9 791 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 RDH13Q8NBN7 331 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 ENOX1Q8TC92 643 aaKnown RBP21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 P3H4Q92791 437 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 KIFC2Q96AC6 838 aa21.47■■□□□ 1.03
CCDC88B-202ENST00000356786 PDE8AO60658 829 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 CTNND1O60716 968 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 SMTNP53814 917 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 RESTQ13127 1097 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 HIBCHQ6NVY1 386 aaPredicted RBP21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 CC2D1AQ6P1N0 951 aaPredicted RBP21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 SARM1Q6SZW1 724 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 CXCR5P32302 372 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 C2orf54Q08AI8 447 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 TADA2BQ86TJ2 420 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 IL17REQ8NFR9 667 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 CFAP61Q8NHU2 1237 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 ZNF622Q969S3 477 aaKnown RBP eCLIP21.46■■□□□ 1.032e-6■■■□□ 17.4
CCDC88B-202ENST00000356786 GMNNO75496 209 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 ADCY8P40145 1251 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 PPARAQ07869 468 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 GEN1Q17RS7 908 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 GRAMD1CQ8IYS0 662 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 N4BP2L2Q92802 583 aaPredicted RBP21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 KLHL29Q96CT2 875 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 ZC3H12CQ9C0D7 883 aaKnown RBP21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 CTAGE3PQ8IX95 158 aa21.46■■□□□ 1.03
CCDC88B-202ENST00000356786 THAP12O43422 761 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 PDE1CQ14123 709 aaPredicted RBP21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 HIBADHP31937 336 aaKnown RBP21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 TECP42680 631 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 ST5P78524 1137 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 IFNL3Q8IZI9 196 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 CNOT6LQ96LI5 555 aaKnown RBP21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 EIF3CLB5ME19 914 aaKnown RBP21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 KCNQ3O43525 872 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 EIF3CQ99613 913 aaKnown RBP21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 TRIM4Q9C037 500 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 GLT8D2Q9H1C3 349 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 PLEKHG1Q9ULL1 1385 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 KIF23Q02241 960 aaPredicted RBP21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 DIXDC1Q155Q3 683 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 NT5C3AQ9H0P0 336 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 MAN1B1Q9UKM7 699 aa21.45■■□□□ 1.02
CCDC88B-202ENST00000356786 TNKSO95271 1327 aa21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 SMCO2A6NFE2 343 aa21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 MORC2Q9Y6X9 1032 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 LZTS2Q9BRK4 669 aa21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 GUCY2CP25092 1073 aa21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 TLR7Q9NYK1 1049 aaKnown RBP21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 DBNLQ9UJU6 430 aaKnown RBP21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 CAPN12Q6ZSI9 719 aa21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 RNF168Q8IYW5 571 aaPredicted RBP21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 GSDMBQ8TAX9 411 aa21.44■■□□□ 1.02
CCDC88B-202ENST00000356786 CDC42BPBQ9Y5S2 1711 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 DDX17Q92841 729 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 PDE6AP16499 860 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 NR1D1P20393 614 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 EEF1GP26641 437 aaKnown RBP21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 SH3BGRP55822 239 aaPredicted RBP21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 ZKSCAN8Q15776 578 aaPredicted RBP21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 UNC13BO14795 1591 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 USP17L12C9JPN9 530 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 USP17L21D6R901 530 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 SH2D4BQ5SQS7 431 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 CD2APQ9Y5K6 639 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 CCDC144BQ3MJ40 725 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 APOA5Q6Q788 366 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 EPSTI1Q96J88 318 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 NYXQ9GZU5 481 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 SLC52A2Q9HAB3 445 aa21.43■■□□□ 1.02
CCDC88B-202ENST00000356786 ARHGEF10O15013 1369 aa21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 BIN2Q9UBW5 565 aaPredicted RBP21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 ATP8A1Q9Y2Q0 1164 aa21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 NDUFA10O95299 355 aa21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 COG7P83436 770 aa21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 CCDC89Q8N998 374 aa21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 GPBP1Q86WP2 473 aa21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 FNBP4Q8N3X1 1017 aaPredicted RBP21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 CLTCL1P53675 1640 aa21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 ROBO2Q9HCK4 1378 aa21.42■■□□□ 1.02
CCDC88B-202ENST00000356786 PANX2Q96RD6 677 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms