RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PPP1R9AQ9ULJ8 1098 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 ATP8B3O60423 1300 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 CHD2O14647 1828 aaKnown RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 H7C1W4 665 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 JAK2O60674 1132 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 TRIM21P19474 475 aaKnown RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 BIRC3Q13489 604 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 ZNF790Q6PG37 636 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 MRRFQ96E11 262 aaKnown RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 VCX3AQ9NNX9 186 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 TMEM110-MUSTN1A8MSY1 372 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 FMNL1O95466 1100 aaPredicted RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 HSPA6P17066 643 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 MTIF2P46199 727 aaKnown RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 PAK1Q13153 545 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 SEPT2Q15019 361 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 UAP1Q16222 522 aaPredicted RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 PDCD2Q16342 344 aaPredicted RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 GEN1Q17RS7 908 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 TRIM65Q6PJ69 517 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 GIMAP4Q9NUV9 329 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 CDHR2Q9BYE9 1310 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 MED1Q15648 1581 aaPredicted RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 EIF3BP55884 814 aaKnown RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 KCNB1Q14721 858 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 CCDC40Q4G0X9 1142 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 SPDL1Q96EA4 605 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 hCG_2014768A0A024R1R8 64 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 VWA3AA6NCI4 1184 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 RGL2O15211 777 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 AP5Z1O43299 807 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 DDAH1O94760 285 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 ALDH3A1P30838 453 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 IFIT5Q13325 482 aaKnown RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 LRIG3Q6UXM1 1119 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 VSIG1Q86XK7 387 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 PRDM11Q9NQV5 511 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 A0A1W2PQJ5 194 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 DNAJC8O75937 253 aaPredicted RBP7.06□□□□□ -1.28
VPS35-201ENST00000299138 ZNF76P36508 570 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 TMEM67Q5HYA8 995 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 RUNDC3BQ96NL0 473 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 SLC52A2Q9HAB3 445 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 VEZTQ9HBM0 779 aa7.06□□□□□ -1.28
VPS35-201ENST00000299138 EIF3CLB5ME19 914 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 GNA14O95837 355 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 GJC1P36383 396 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 PTPN12Q05209 780 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 WTAPQ15007 396 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 KIF6Q6ZMV9 814 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 MFSD6Q6ZSS7 791 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 CATIPQ7Z7H3 387 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 ZNF354CQ86Y25 554 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 DIS3L2Q8IYB7 885 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 MAGEC3Q8TD91 643 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 SECISBP2LQ93073 1101 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 EIF3CQ99613 913 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 EPN1Q9Y6I3 576 aaPredicted RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 FOXP2O15409 715 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 XAGE3Q8WTP9 111 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 CCDC42Q96M95 316 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 MYD88Q99836 296 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 MMRN2Q9H8L6 949 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 MIS18AQ9NYP9 233 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 UBAP1Q9NZ09 502 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 EEF2P13639 858 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 NBPF10Q6P3W6 841 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 CCDC62Q6P9F0 684 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 PDZD8Q8NEN9 1154 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 HVCN1Q96D96 273 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 UIMC1Q96RL1 719 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 SELENOOQ9BVL4 669 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 CAPS2Q9BXY5 557 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 ZFYVE1Q9HBF4 777 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 DIS3Q9Y2L1 958 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 MAST3O60307 1309 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 PALM3A6NDB9 673 aaPredicted RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 CFAP221Q4G0U5 840 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 FYB2Q5VWT5 728 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 SMYD5Q6GMV2 418 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 HAUS1Q96CS2 278 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 CDC5LQ99459 802 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 SH3GLB2Q9NR46 395 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 FANCLQ9NW38 375 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 PAIP2BQ9ULR5 123 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 ZBBXA8MT70 800 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 ERVV-2B6SEH9 535 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 IFIT3O14879 490 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 CRCPO75575 148 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 SLC5A1P13866 664 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 ST3GAL1Q11201 340 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 CUL1Q13616 776 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 NR1I3Q14994 352 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 PAPD7Q5XG87 772 aaKnown RBP7.05□□□□□ -1.28
VPS35-201ENST00000299138 APOA5Q6Q788 366 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 CFAP61Q8NHU2 1237 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 DBNDD2Q9BQY9 259 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 PAGR1Q9BTK6 254 aa7.05□□□□□ -1.28
VPS35-201ENST00000299138 SPEF2Q9C093 1822 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms