RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 RUFY4Q6ZNE9 571 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 PPFIBP1Q86W92 1011 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 ANKLE2Q86XL3 938 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 SIRT2Q8IXJ6 389 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 RBBP8NLQ8NC74 664 aaPredicted RBP7.33□□□□□ -1.24
CD44-239ENST00000639002 KCNN1Q92952 543 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 SLC26A8Q96RN1 970 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 MKRN2Q9H000 416 aaKnown RBP7.33□□□□□ -1.24
CD44-239ENST00000639002 PPT2Q9UMR5 302 aa7.33□□□□□ -1.24
CD44-239ENST00000639002 MEIS1O00470 390 aa7.32□□□□□ -1.24
CD44-239ENST00000639002 KIR3DS1Q14943 382 aa7.32□□□□□ -1.24
CD44-239ENST00000639002 LRRC56Q8IYG6 542 aaPredicted RBP7.32□□□□□ -1.24
CD44-239ENST00000639002 TAB3Q8N5C8 712 aaPredicted RBP7.32□□□□□ -1.24
CD44-239ENST00000639002 TOX2Q96NM4 488 aa7.32□□□□□ -1.24
CD44-239ENST00000639002 PLCD4Q9BRC7 762 aa7.32□□□□□ -1.24
CD44-239ENST00000639002 FBXL21Q9UKT6 434 aa7.32□□□□□ -1.24
CD44-239ENST00000639002 SMG5Q9UPR3 1016 aaKnown RBP7.32□□□□□ -1.24
CD44-239ENST00000639002 PCDHB12Q9Y5F1 795 aa7.32□□□□□ -1.24
CD44-239ENST00000639002 FADS2P1A8MWK0 482 aa7.31□□□□□ -1.24
CD44-239ENST00000639002 NPIPB6E9PJ23 425 aa7.31□□□□□ -1.24
CD44-239ENST00000639002 KRTAP19-4Q3LI73 84 aa7.31□□□□□ -1.24
CD44-239ENST00000639002 ZNF605Q86T29 641 aa7.31□□□□□ -1.24
CD44-239ENST00000639002 C7orf61Q8IZ16 206 aa7.31□□□□□ -1.24
CD44-239ENST00000639002 TMEM52Q8NDY8 209 aa7.31□□□□□ -1.24
CD44-239ENST00000639002 GCM1Q9NP62 436 aa7.31□□□□□ -1.24
CD44-239ENST00000639002 SSU72P8A0A1W2PR75 194 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 SCAMP3O14828 347 aaKnown RBP7.3□□□□□ -1.24
CD44-239ENST00000639002 PEX10O60683 326 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 ZNF205O95201 554 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 IMPDH2P12268 514 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 VAV1P15498 845 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 BMP8BP34820 402 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 PMS1P54277 932 aaKnown RBP7.3□□□□□ -1.24
CD44-239ENST00000639002 PAK2Q13177 524 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 KCNA10Q16322 511 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 AXDND1Q5T1B0 1012 aaPredicted RBP7.3□□□□□ -1.24
CD44-239ENST00000639002 TDRD10Q5VZ19 366 aaKnown RBP7.3□□□□□ -1.24
CD44-239ENST00000639002 UNC5AQ6ZN44 842 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 CEP128Q6ZU80 1094 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 DHRS1Q96LJ7 313 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 FERD3LQ96RJ6 166 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 TM9SF2Q99805 663 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 GINM1Q9NU53 330 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 PRR13Q9NZ81 148 aa7.3□□□□□ -1.24
CD44-239ENST00000639002 PDE6BP35913 854 aa7.29□□□□□ -1.24
CD44-239ENST00000639002 DLG4P78352 724 aa7.29□□□□□ -1.24
CD44-239ENST00000639002 ANKRD39Q53RE8 183 aa7.29□□□□□ -1.24
CD44-239ENST00000639002 RTP2Q5QGT7 225 aa7.29□□□□□ -1.24
CD44-239ENST00000639002 DCAF15Q66K64 600 aa7.29□□□□□ -1.24
CD44-239ENST00000639002 CRTC3Q6UUV7 619 aa7.29□□□□□ -1.24
CD44-239ENST00000639002 LSRQ86X29 649 aaPredicted RBP7.29□□□□□ -1.24
CD44-239ENST00000639002 FCRL2Q96LA5 508 aaPredicted RBP7.29□□□□□ -1.24
CD44-239ENST00000639002 SGPP1Q9BX95 441 aa7.29□□□□□ -1.24
CD44-239ENST00000639002 ERVK13-1Q9NX77 482 aa7.29□□□□□ -1.24
CD44-239ENST00000639002 LTBP3Q9NS15 1303 aa7.28□□□□□ -1.24
CD44-239ENST00000639002 RTP1P59025 263 aa7.28□□□□□ -1.24
CD44-239ENST00000639002 SLC14A2Q15849 920 aa7.28□□□□□ -1.24
CD44-239ENST00000639002 HSF5Q4G112 596 aaPredicted RBP7.28□□□□□ -1.24
CD44-239ENST00000639002 CCDC144CPQ8IYA2 1237 aa7.28□□□□□ -1.24
CD44-239ENST00000639002 ZNF654Q8IZM8 581 aa7.28□□□□□ -1.24
CD44-239ENST00000639002 CRTAC1Q9NQ79 661 aa7.28□□□□□ -1.24
CD44-239ENST00000639002 AP5S1Q9NUS5 200 aa7.28□□□□□ -1.24
CD44-239ENST00000639002 TNFRSF10DQ9UBN6 386 aa7.28□□□□□ -1.24
CD44-239ENST00000639002 TEX51A0A1B0GUA7 166 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 TCAF2A6NFQ2 919 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 SDHBP21912 280 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 GUCY2CP25092 1073 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 ZNF445P59923 1031 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 HDLBPQ00341 1268 aaKnown RBP7.27□□□□□ -1.25
CD44-239ENST00000639002 ADGRF1Q5T601 910 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 FBXW10Q5XX13 1052 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 CCDC81Q6ZN84 652 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 SLCO6A1Q86UG4 719 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 AMIGO3Q86WK7 504 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 SLC12A9Q9BXP2 914 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 KIAA1522Q9P206 1035 aaPredicted RBP7.27□□□□□ -1.25
CD44-239ENST00000639002 GPR55Q9Y2T6 319 aaPredicted RBP7.27□□□□□ -1.25
CD44-239ENST00000639002 ZNF451Q9Y4E5 1061 aa7.27□□□□□ -1.25
CD44-239ENST00000639002 OR14I1A6ND48 311 aa7.26□□□□□ -1.25
CD44-239ENST00000639002 UNCXA6NJT0 531 aa7.26□□□□□ -1.25
CD44-239ENST00000639002 TP53P04637 393 aaPredicted RBP7.26□□□□□ -1.25
CD44-239ENST00000639002 ZSCAN22P10073 491 aaPredicted RBP7.26□□□□□ -1.25
CD44-239ENST00000639002 PNLIPP16233 465 aa7.26□□□□□ -1.25
CD44-239ENST00000639002 SOX9P48436 509 aa7.26□□□□□ -1.25
CD44-239ENST00000639002 LINC00310P59036 64 aa7.26□□□□□ -1.25
CD44-239ENST00000639002 TRIM26Q12899 539 aaPredicted RBP7.26□□□□□ -1.25
CD44-239ENST00000639002 C9orf131Q5VYM1 1079 aa7.26□□□□□ -1.25
CD44-239ENST00000639002 SIAH1Q8IUQ4 282 aa7.26□□□□□ -1.25
CD44-239ENST00000639002 ZSCAN18Q8TBC5 510 aaPredicted RBP7.26□□□□□ -1.25
CD44-239ENST00000639002 CDADC1Q9BWV3 514 aa7.26□□□□□ -1.25
CD44-239ENST00000639002 GP6Q9HCN6 339 aa7.26□□□□□ -1.25
CD44-239ENST00000639002 ZNF214Q9UL59 606 aaPredicted RBP7.26□□□□□ -1.25
CD44-239ENST00000639002 H0Y8X5 98 aa7.25□□□□□ -1.25
CD44-239ENST00000639002 SEMA7AO75326 666 aa7.25□□□□□ -1.25
CD44-239ENST00000639002 GSNP06396 782 aa7.25□□□□□ -1.25
CD44-239ENST00000639002 CD247P20963 164 aa7.25□□□□□ -1.25
CD44-239ENST00000639002 HOMEZQ8IX15 550 aa7.25□□□□□ -1.25
CD44-239ENST00000639002 RASGRP4Q8TDF6 673 aa7.25□□□□□ -1.25
CD44-239ENST00000639002 SMARCC1Q92922 1105 aaPredicted RBP7.25□□□□□ -1.25
CD44-239ENST00000639002 BRF1Q92994 677 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms