RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 FBXO40Q9UH90 709 aa21.27■■□□□ 1
SHKBP1-227ENST00000602011 SYNGAP1Q96PV0 1343 aa21.27■□□□□ 0.99
SHKBP1-227ENST00000602011 SLC3A2P08195 630 aaKnown RBP21.26■□□□□ 0.99
SHKBP1-227ENST00000602011 OAZ1P54368 228 aa21.26■□□□□ 0.99
SHKBP1-227ENST00000602011 FAM47AQ5JRC9 791 aa21.26■□□□□ 0.99
SHKBP1-227ENST00000602011 ZNF697Q5TEC3 545 aa21.26■□□□□ 0.99
SHKBP1-227ENST00000602011 MAMDC4Q6UXC1 1216 aa21.26■□□□□ 0.99
SHKBP1-227ENST00000602011 OSBP2Q969R2 916 aa21.26■□□□□ 0.99
SHKBP1-227ENST00000602011 PDLIM7Q9NR12 457 aa21.26■□□□□ 0.99
SHKBP1-227ENST00000602011 FEM1BQ9UK73 627 aa21.26■□□□□ 0.99
SHKBP1-227ENST00000602011 TTC41PQ6P2S7 1318 aa21.26■□□□□ 0.99
SHKBP1-227ENST00000602011 TRIM43BA6NCK2 446 aa21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 GPAA1O43292 621 aa21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 CHGBP05060 677 aa21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 APPP05067 770 aa21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 PGK2P07205 417 aa21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 TDO2P48775 406 aa21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 PDE4BQ07343 736 aa21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 TRIM43Q96BQ3 446 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 CDX2Q99626 313 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 CLIP2Q9UDT6 1046 aa21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 FAM184BQ9ULE4 1060 aa21.25■□□□□ 0.99
SHKBP1-227ENST00000602011 IGKV6D-41A0A0C4DH26 115 aa21.24■□□□□ 0.99
SHKBP1-227ENST00000602011 TTLL1O95922 423 aa21.24■□□□□ 0.99
SHKBP1-227ENST00000602011 NDUFB10O96000 172 aa21.24■□□□□ 0.99
SHKBP1-227ENST00000602011 ZNF865P0CJ78 1059 aaPredicted RBP21.24■□□□□ 0.99
SHKBP1-227ENST00000602011 SNRNP48Q6IEG0 339 aaKnown RBP21.24■□□□□ 0.99
SHKBP1-227ENST00000602011 CHST13Q8NET6 341 aa21.24■□□□□ 0.99
SHKBP1-227ENST00000602011 NUP133Q8WUM0 1156 aa21.24■□□□□ 0.99
SHKBP1-227ENST00000602011 TOX2Q96NM4 488 aa21.24■□□□□ 0.99
SHKBP1-227ENST00000602011 MTMR4Q9NYA4 1195 aa21.24■□□□□ 0.99
SHKBP1-227ENST00000602011 VCANP13611 3396 aa21.23■□□□□ 0.99
SHKBP1-227ENST00000602011 MOXD2PA6NHM9 499 aa21.23■□□□□ 0.99
SHKBP1-227ENST00000602011 ITGB8P26012 769 aa21.23■□□□□ 0.99
SHKBP1-227ENST00000602011 TLE2Q04725 743 aa21.23■□□□□ 0.99
SHKBP1-227ENST00000602011 C20orf194Q5TEA3 1177 aa21.23■□□□□ 0.99
SHKBP1-227ENST00000602011 GMCL1P1Q8NEA9 526 aa21.23■□□□□ 0.99
SHKBP1-227ENST00000602011 SEMA6BQ9H3T3 888 aa21.23■□□□□ 0.99
SHKBP1-227ENST00000602011 MYH8P13535 1937 aa21.23■□□□□ 0.99
SHKBP1-227ENST00000602011 BAZ2AQ9UIF9 1905 aaKnown RBP21.23■□□□□ 0.99
SHKBP1-227ENST00000602011 SMCHD1A6NHR9 2005 aa21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 PRUNE2Q8WUY3 3088 aa21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 DNAJC25-GNG10A0A024R161 153 aa21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 TAL1P17542 331 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 IFNL3Q8IZI9 196 aa21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 NEDD1Q8NHV4 660 aa21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 MYLIPQ8WY64 445 aa21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 LENG1Q96BZ8 264 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 TTYH1Q9H313 450 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 SPC25Q9HBM1 224 aa21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 SLC38A10Q9HBR0 1119 aa21.22■□□□□ 0.99
SHKBP1-227ENST00000602011 DUSP11O75319 330 aaKnown RBP21.21■□□□□ 0.99
SHKBP1-227ENST00000602011 CLTBP09497 229 aa21.21■□□□□ 0.99
SHKBP1-227ENST00000602011 SMAD3P84022 425 aaKnown RBP21.21■□□□□ 0.99
SHKBP1-227ENST00000602011 CHURC1Q8WUH1 139 aa21.21■□□□□ 0.99
SHKBP1-227ENST00000602011 ABHD16BQ9H3Z7 469 aa21.21■□□□□ 0.99
SHKBP1-227ENST00000602011 ZNFX1Q9P2E3 1918 aaKnown RBP21.21■□□□□ 0.99
SHKBP1-227ENST00000602011 CDH23Q9H251 3354 aa21.2■□□□□ 0.99
SHKBP1-227ENST00000602011 PARP14Q460N5 1801 aa21.2■□□□□ 0.98
SHKBP1-227ENST00000602011 KIAA0355O15063 1070 aa21.2■□□□□ 0.98
SHKBP1-227ENST00000602011 PGK1P00558 417 aa21.2■□□□□ 0.98
SHKBP1-227ENST00000602011 EPHB4P54760 987 aa21.2■□□□□ 0.98
SHKBP1-227ENST00000602011 ANKRD33Q7Z3H0 272 aa21.2■□□□□ 0.98
SHKBP1-227ENST00000602011 ANKRD35Q8N283 1001 aa21.2■□□□□ 0.98
SHKBP1-227ENST00000602011 PCSK9Q8NBP7 692 aaKnown RBP21.2■□□□□ 0.98
SHKBP1-227ENST00000602011 NUP88Q99567 741 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-227ENST00000602011 COL11A1P12107 1806 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-227ENST00000602011 A0A1W2PQ45 241 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 A0A1W2PQY0 241 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 DCDC2CA8MYV0 355 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 PLA2G6O60733 806 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 ADAMTS4O75173 837 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 TSPY3P0CV98 308 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 TSPY8P0CW00 308 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 BMP3P12645 472 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 FAM160B2Q86V87 743 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 TICAM2Q86XR7 235 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 CPXCR1Q8N123 301 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 KLHDC9Q8NEP7 349 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 MAFAQ8NHW3 353 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 KIFC2Q96AC6 838 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 CEP95Q96GE4 821 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 NAPBQ9H115 298 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 EPB41L4AQ9HCS5 686 aaPredicted RBP21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 ELP1O95163 1332 aa21.19■□□□□ 0.98
SHKBP1-227ENST00000602011 MYH7P12883 1935 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 TMEM265A0A087WTH1 108 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 SNAI1O95863 264 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 RAG1P15918 1043 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 CST5P28325 142 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 ACLYP53396 1101 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 ACVR2BQ13705 512 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 TKFCQ3LXA3 575 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 SLFN13Q68D06 897 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 GLT1D1Q96MS3 346 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 STARD7Q9NQZ5 370 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 TMEM39AQ9NV64 488 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 ZBTB47Q9UFB7 747 aaPredicted RBP21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 RIPK3Q9Y572 518 aa21.18■□□□□ 0.98
SHKBP1-227ENST00000602011 MROH7Q68CQ1 1323 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms