RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	MCTP2	Q6DN12	878 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	RAB34	Q9BZG1	259 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	MCM9	Q9NXL9	1143 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	L1RE1	Q9UN81	338 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	GOLGA8K	D6RF30	607 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	CALM1	P0DP23	149 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	CALM2	P0DP24	149 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	CALM3	P0DP25	149 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	CLNS1A	P54105	237 aa	Known RBP	12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	HSPA2	P54652	639 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	PPARA	Q07869	468 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	ATG9A	Q7Z3C6	839 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	EPB41L5	Q9HCM4	733 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	NEDD4	P46934	1319 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	TECPR2	O15040	1411 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	NPHP4	O75161	1426 aa	Predicted RBP	12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	MOCS3	O95396	460 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	TXK	P42681	527 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	USP14	P54578	494 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	RASSF7	Q02833	373 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	HYOU1	Q9Y4L1	999 aa		12.69	□□□□□ -0.38
CLN3-238	ENST00000569430	TCP11X2	Q5H9J9	407 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	RSRC2	Q7L4I2	434 aa	Known RBP	12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	COG1	Q8WTW3	980 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430		A0A1B0GTH6	734 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	LRRIQ3	A6PVS8	624 aa	Predicted RBP	12.68	□□□□□ -0.38
CLN3-238	ENST00000569430		H7C1W4	665 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	GCOM1	H8Y6P7	765 aa	Predicted RBP	12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	MYZAP	P0CAP1	466 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	BCAM	P50895	628 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	NNT	Q13423	1086 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	BANK1	Q8NDB2	785 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	LPIN2	Q92539	896 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	TBC1D7	Q9P0N9	293 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	ESYT3	A0FGR9	886 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	NEFH	P12036	1026 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	UBE3C	Q15386	1083 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	CRNKL1	Q9BZJ0	848 aa	Known RBP	12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	SLC39A2	Q9NP94	309 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	FAM184B	Q9ULE4	1060 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	AGL	P35573	1532 aa		12.68	□□□□□ -0.38
CLN3-238	ENST00000569430	CYP2D7	A0A087X1C5	515 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	USP17L12	C9JPN9	530 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	USP17L21	D6R901	530 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	VIM	P08670	466 aa	Known RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	CCDC172	P0C7W6	258 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	EHHADH	Q08426	723 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	INF2	Q27J81	1249 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	KRT71	Q3SY84	523 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	LRRC31	Q6UY01	552 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	SMCR8	Q8TEV9	937 aa	Predicted RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	KRT12	Q99456	494 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	ANKZF1	Q9H8Y5	726 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	RBM28	Q9NW13	759 aa	Known RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	PSD3	Q9NYI0	1048 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	ADD3	Q9UEY8	706 aa	Known RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	GYPC	P04921	128 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	RPSA	P08865	295 aa	Known RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	TSPY3	P0CV98	308 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	TSPY8	P0CW00	308 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	TCP1	P17987	556 aa	Known RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	KIAA0753	Q2KHM9	967 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	KRT26	Q7Z3Y9	468 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	FBXO2	Q9UK22	296 aa	Predicted RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	ITSN1	Q15811	1721 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	GOLGB1	Q14789	3259 aa	Known RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	GOLGA6L10	A0A0M3HER8	536 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	CCNT1	O60563	726 aa	Known RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	KRT13	P13646	458 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	RFX5	P48382	616 aa	Predicted RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	RASGRP2	Q7LDG7	609 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	CCDC25	Q86WR0	208 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	SH2D3C	Q8N5H7	860 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	CNOT6L	Q96LI5	555 aa	Known RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	LY9	Q9HBG7	655 aa		12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	12.67	□□□□□ -0.38
CLN3-238	ENST00000569430	HEXIM1	O94992	359 aa	Known RBP	12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	LIFR	P42702	1097 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	DZIP3	Q86Y13	1208 aa	Known RBP	12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	NFU1	Q9UMS0	254 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	PDE8B	O95263	885 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	PTPA	Q15257	358 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	SLC9C1	Q4G0N8	1177 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	TRMT1L	Q7Z2T5	733 aa	Known RBP	12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	ANKS4B	Q8N8V4	417 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	STRBP	Q96SI9	672 aa	Known RBP	12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	CIAO1	O76071	339 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	CTNNA1	P35221	906 aa	Known RBP	12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	PRCP	P42785	496 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	SV2B	Q7L1I2	683 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	CABP7	Q86V35	215 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	NELFCD	Q8IXH7	590 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	LCORL	Q8N3X6	602 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	RWDD2A	Q9UIY3	292 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	ADGRL3	Q9HAR2	1447 aa		12.66	□□□□□ -0.38
CLN3-238	ENST00000569430	C3	P01024	1663 aa		12.66	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms