RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 TROAPQ12815 778 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 SLC4A8Q2Y0W8 1093 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 GADL1Q6ZQY3 521 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 FOXP4Q8IVH2 680 aaPredicted RBP10.32□□□□□ -0.76
VPS39-207ENST00000563692 PHKBQ93100 1093 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 SPATA32Q96LK8 384 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 LZTS2Q9BRK4 669 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 RNF26Q9BY78 433 aaPredicted RBP10.32□□□□□ -0.76
VPS39-207ENST00000563692 RBM27Q9P2N5 1060 aaKnown RBP10.32□□□□□ -0.76
VPS39-207ENST00000563692 SERPINB13Q9UIV8 391 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 ISY1Q9ULR0 285 aaKnown RBP10.32□□□□□ -0.76
VPS39-207ENST00000563692 ELP1O95163 1332 aa10.32□□□□□ -0.76
VPS39-207ENST00000563692 A0A0G2JLL6 359 aaPredicted RBP10.31□□□□□ -0.76
VPS39-207ENST00000563692 FAM196BA6NMK8 535 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 PRPF3O43395 683 aaKnown RBP10.31□□□□□ -0.76
VPS39-207ENST00000563692 GNRH1P01148 92 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 RASA1P20936 1047 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 HOXD10P28358 340 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 DEKP35659 375 aaKnown RBP10.31□□□□□ -0.76
VPS39-207ENST00000563692 FOSBP53539 338 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 LACTBP83111 547 aaPredicted RBP10.31□□□□□ -0.76
VPS39-207ENST00000563692 GUCY1B3Q02153 619 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 L1TD1Q5T7N2 865 aaKnown RBP10.31□□□□□ -0.76
VPS39-207ENST00000563692 PRRT2Q7Z6L0 340 aaPredicted RBP10.31□□□□□ -0.76
VPS39-207ENST00000563692 NBPF11Q86T75 865 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 SMCR8Q8TEV9 937 aaPredicted RBP10.31□□□□□ -0.76
VPS39-207ENST00000563692 CCDC17Q96LX7 622 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 EHD4Q9H223 541 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 AS3MTQ9HBK9 375 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 GDPD2Q9HCC8 539 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 TFIP11Q9UBB9 837 aaKnown RBP10.31□□□□□ -0.76
VPS39-207ENST00000563692 CPA4Q9UI42 421 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 PNMA3Q9UL41 463 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 STX8Q9UNK0 236 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 PTPN22Q9Y2R2 807 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 AFG3L2Q9Y4W6 797 aa10.31□□□□□ -0.76
VPS39-207ENST00000563692 USP17L5A8MUK1 530 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 NMT2O60551 498 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 PPFIA3O75145 1194 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 ASNSP08243 561 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 TOP1P11387 765 aaKnown RBP10.3□□□□□ -0.76
VPS39-207ENST00000563692 CAP2P40123 477 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 EVX2Q03828 476 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 PABPC4Q13310 644 aaKnown RBP eCLIP10.3□□□□□ -0.76
VPS39-207ENST00000563692 SLC9C1Q4G0N8 1177 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 KRT40Q6A162 431 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 CAVIN1Q6NZI2 390 aaKnown RBP10.3□□□□□ -0.76
VPS39-207ENST00000563692 CCDC82Q8N4S0 544 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 ZNF280CQ8ND82 737 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 PNMA1Q8ND90 353 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 GPT2Q8TD30 523 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 CHAMP1Q96JM3 812 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 IL17RBQ9NRM6 502 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 SLC45A1Q9Y2W3 748 aa10.3□□□□□ -0.76
VPS39-207ENST00000563692 GOLGA6L3A6NEY3 463 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 GADD45BO75293 160 aaPredicted RBP10.29□□□□□ -0.76
VPS39-207ENST00000563692 SLURP2P0DP57 97 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 PRMT2P55345 433 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 FCGRTP55899 365 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 GABPAQ06546 454 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 SPP2Q13103 211 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 RCSD1Q6JBY9 416 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 FAM173BQ6P4H8 233 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 C17orf99Q6UX52 265 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 TMTC3Q6ZXV5 915 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 SLC44A5Q8NCS7 719 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 LEO1Q8WVC0 666 aaPredicted RBP10.29□□□□□ -0.76
VPS39-207ENST00000563692 TMEM47Q9BQJ4 181 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 TMEM106CQ9BVX2 250 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 BRMS1Q9HCU9 246 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 GINM1Q9NU53 330 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 TMOD4Q9NZQ9 345 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 RCOR1Q9UKL0 485 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 AGTPBP1Q9UPW5 1226 aa10.29□□□□□ -0.76
VPS39-207ENST00000563692 V9GY48 417 aaPredicted RBP10.29□□□□□ -0.76
VPS39-207ENST00000563692 BAZ2AQ9UIF9 1905 aaKnown RBP10.29□□□□□ -0.76
VPS39-207ENST00000563692 ECM2O94769 699 aaPredicted RBP10.28□□□□□ -0.76
VPS39-207ENST00000563692 CYP2C8P10632 490 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 OSBPP22059 807 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 SMARCA1P28370 1054 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 PSMC4P43686 418 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 MOGSQ13724 837 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 GRM4Q14833 912 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 SF3A1Q15459 793 aaKnown RBP10.28□□□□□ -0.76
VPS39-207ENST00000563692 GPAT2Q6NUI2 795 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 PROCA1Q8NCQ7 364 aaPredicted RBP10.28□□□□□ -0.76
VPS39-207ENST00000563692 ARMC5Q96C12 935 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 FOXP1Q9H334 677 aaPredicted RBP10.28□□□□□ -0.76
VPS39-207ENST00000563692 RTEL1Q9NZ71 1219 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.28□□□□□ -0.76
VPS39-207ENST00000563692 LAMB1P07942 1786 aa10.28□□□□□ -0.76
VPS39-207ENST00000563692 MPHOSPH10O00566 681 aaKnown RBP10.27□□□□□ -0.77
VPS39-207ENST00000563692 TTLL1O95922 423 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 MMP1P03956 469 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 PARP1P09874 1014 aaKnown RBP10.27□□□□□ -0.77
VPS39-207ENST00000563692 U2AF2P26368 475 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS39-207ENST00000563692 NOVP48745 357 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 HMGCS2P54868 508 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 ZNF445P59923 1031 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 STK38Q15208 465 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms