RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 HOMER1Q86YM7 354 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 ANKRD13AQ8IZ07 590 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 LPAR1Q92633 364 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 GPKOWQ92917 476 aaPredicted RBP eCLIP15.66■□□□□ 0.1
VPS39-206ENST00000562662 SH3GLB2Q9NR46 395 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 EMILIN3Q9NT22 766 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 ISY1Q9ULR0 285 aaKnown RBP15.66■□□□□ 0.1
VPS39-206ENST00000562662 AFG3L2Q9Y4W6 797 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 ATP6V1DQ9Y5K8 247 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 ZHX2Q9Y6X8 837 aa15.66■□□□□ 0.1
VPS39-206ENST00000562662 STXBP3O00186 592 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 WDR46O15213 610 aaKnown RBP15.65■□□□□ 0.1
VPS39-206ENST00000562662 MCM4P33991 863 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 USP14P54578 494 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 BACE1P56817 501 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 DGKZQ13574 1117 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 NPY5RQ15761 445 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 FOXD4L6Q3SYB3 417 aaPredicted RBP15.65■□□□□ 0.1
VPS39-206ENST00000562662 SYDE2Q5VT97 1194 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 FAM173BQ6P4H8 233 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 FOXD4L3Q6VB84 417 aaPredicted RBP15.65■□□□□ 0.1
VPS39-206ENST00000562662 ARMC9Q7Z3E5 817 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 C12orf42Q96LP6 360 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 BARHL2Q9NY43 387 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 SEC63Q9UGP8 760 aaKnown RBP15.65■□□□□ 0.1
VPS39-206ENST00000562662 CSADQ9Y600 493 aa15.65■□□□□ 0.1
VPS39-206ENST00000562662 COL11A1P12107 1806 aaPredicted RBP15.65■□□□□ 0.1
VPS39-206ENST00000562662 PNMA6FA0A0J9YX94 578 aa15.64■□□□□ 0.09
VPS39-206ENST00000562662 hCG_1984214I3L0E3 225 aa15.64■□□□□ 0.09
VPS39-206ENST00000562662 ZBTB5O15062 677 aa15.64■□□□□ 0.09
VPS39-206ENST00000562662 PPP1R11O60927 126 aaPredicted RBP15.64■□□□□ 0.09
VPS39-206ENST00000562662 U2AF2P26368 475 aaKnown RBP eCLIP15.64■□□□□ 0.09
VPS39-206ENST00000562662 STAT2P52630 851 aa15.64■□□□□ 0.09
VPS39-206ENST00000562662 TTLL12Q14166 644 aaPredicted RBP15.64■□□□□ 0.09
VPS39-206ENST00000562662 LDLRAD1Q5T700 205 aa15.64■□□□□ 0.09
VPS39-206ENST00000562662 HEATR3Q7Z4Q2 680 aa15.64■□□□□ 0.09
VPS39-206ENST00000562662 DIS3L2Q8IYB7 885 aaKnown RBP15.64■□□□□ 0.09
VPS39-206ENST00000562662 FAM177A1Q8N128 213 aaPredicted RBP15.64■□□□□ 0.09
VPS39-206ENST00000562662 ZNF713Q8N859 430 aaPredicted RBP15.64■□□□□ 0.09
VPS39-206ENST00000562662 CLMNQ96JQ2 1002 aa15.64■□□□□ 0.09
VPS39-206ENST00000562662 ELP3Q9H9T3 547 aa15.64■□□□□ 0.09
VPS39-206ENST00000562662 PRR12Q9ULL5 1215 aa15.64■□□□□ 0.09
VPS39-206ENST00000562662 TRIM75PA6NK02 468 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 BTBD18B2RXH4 712 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 C19orf81C9J6K1 198 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 VCAM1P19320 739 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 DNM1Q05193 864 aaKnown RBP15.63■□□□□ 0.09
VPS39-206ENST00000562662 SAFBQ15424 915 aaKnown RBP eCLIP15.63■□□□□ 0.09
VPS39-206ENST00000562662 CDC37Q16543 378 aaPredicted RBP15.63■□□□□ 0.09
VPS39-206ENST00000562662 QRICH1Q2TAL8 776 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 SH3D19Q5HYK7 790 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 BRAPQ7Z569 592 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 FAM160B2Q86V87 743 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 CCDC148Q8NFR7 591 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 OXER1Q8TDS5 423 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 CNKSR2Q8WXI2 1034 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 FOXP1Q9H334 677 aaPredicted RBP15.63■□□□□ 0.09
VPS39-206ENST00000562662 FEM1BQ9UK73 627 aa15.63■□□□□ 0.09
VPS39-206ENST00000562662 SPDYE5A6NIY4 337 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 ADAMTS3O15072 1205 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 KRT2P35908 639 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 HMGCS2P54868 508 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 NAPAP54920 295 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 NLRP5P59047 1200 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 PPATQ06203 517 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 IKQ13123 557 aaPredicted RBP15.62■□□□□ 0.09
VPS39-206ENST00000562662 CHADLQ6NUI6 762 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 PPP1R18Q6NYC8 613 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 ERO1BQ86YB8 467 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 DAGLBQ8NCG7 672 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 CHURC1Q8WUH1 139 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 TNFRSF25Q93038 417 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 COA7Q96BR5 231 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 ZNF408Q9H9D4 720 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 FBXO28Q9NVF7 368 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 CNPY2Q9Y2B0 182 aa15.62■□□□□ 0.09
VPS39-206ENST00000562662 ESYT2A0FGR8 921 aa15.61■□□□□ 0.09
VPS39-206ENST00000562662 UNCXA6NJT0 531 aa15.61■□□□□ 0.09
VPS39-206ENST00000562662 ITGBL1O95965 494 aaPredicted RBP15.61■□□□□ 0.09
VPS39-206ENST00000562662 CALML3P27482 149 aa15.61■□□□□ 0.09
VPS39-206ENST00000562662 SNAP25P60880 206 aa15.61■□□□□ 0.09
VPS39-206ENST00000562662 FKBP1BP68106 108 aa15.61■□□□□ 0.09
VPS39-206ENST00000562662 NR5A1Q13285 461 aa15.61■□□□□ 0.09
VPS39-206ENST00000562662 MYSM1Q5VVJ2 828 aa15.61■□□□□ 0.09
VPS39-206ENST00000562662 NOSTRINQ8IVI9 506 aa15.61■□□□□ 0.09
VPS39-206ENST00000562662 CCDC12Q8WUD4 166 aaPredicted RBP15.61■□□□□ 0.09
VPS39-206ENST00000562662 ZMYND12Q9H0C1 365 aa15.61■□□□□ 0.09
VPS39-206ENST00000562662 RANBP17Q9H2T7 1088 aaKnown RBP15.61■□□□□ 0.09
VPS39-206ENST00000562662 RPAP3Q9H6T3 665 aaPredicted RBP15.61■□□□□ 0.09
VPS39-206ENST00000562662 RBBP6Q7Z6E9 1792 aaKnown RBP15.61■□□□□ 0.09
VPS39-206ENST00000562662 A0A0G2JMZ2 1700 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 M0R2N6 131 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 KRT85P78386 507 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 PPIL2Q13356 520 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 GNL2Q13823 731 aaKnown RBP15.6■□□□□ 0.09
VPS39-206ENST00000562662 GALNT17Q6IS24 598 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 BLIDQ8IZY5 108 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 TMEM87AQ8NBN3 555 aa15.6■□□□□ 0.09
VPS39-206ENST00000562662 RBM46Q8TBY0 533 aaKnown RBP15.6■□□□□ 0.09
VPS39-206ENST00000562662 KIFC2Q96AC6 838 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms