RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 COPB1P53618 953 aaKnown RBP11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 TRAF1Q13077 416 aa11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 NIM1KQ8IY84 436 aa11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 SMYD4Q8IYR2 804 aaPredicted RBP11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 CCDC197Q8NCU1 140 aa11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 TMEM106CQ9BVX2 250 aa11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 ABCB6Q9NP58 842 aa11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 MYO1CO00159 1063 aa11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 LUC7L3O95232 432 aaKnown RBP11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 DNM2P50570 870 aa11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 POLR2FP61218 127 aaKnown RBP11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 MAP7Q14244 749 aa11.24□□□□□ -0.61
GTF3C1-202ENST00000561623 DDX39AO00148 427 aaKnown RBP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 EXOC3O60645 756 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 NAA30Q147X3 362 aaPredicted RBP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 FAM47AQ5JRC9 791 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 TEX11Q8IYF3 940 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 RNF168Q8IYW5 571 aaPredicted RBP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 AATFQ9NY61 560 aaKnown RBP eCLIP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 PCDHA5Q9Y5H7 936 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 PZPP20742 1482 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 CXCR5P32302 372 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 ADCY8P40145 1251 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 CFAP61Q8NHU2 1237 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 NUCKS1Q9H1E3 243 aaKnown RBP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 EPB41L5Q9HCM4 733 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 PCDHB13Q9Y5F0 798 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 BACH1O14867 736 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 PUM3Q15397 648 aaKnown RBP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 CASC4Q6P4E1 433 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 NAP1L4Q99733 375 aaKnown RBP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 EFCC1Q9HA90 598 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 PFDN4Q9NQP4 134 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 ADCY9O60503 1353 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 BTBD18B2RXH4 712 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 ATP5JP18859 108 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 MKRN3Q13064 507 aaKnown RBP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 PLBD2Q8NHP8 589 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 NPC1L1Q9UHC9 1359 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 CTAGE3PQ8IX95 158 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 GRAMD1CQ8IYS0 662 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 SYMPKQ92797 1274 aaKnown RBP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 TEX14Q8IWB6 1497 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 URB2Q14146 1524 aaKnown RBP11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 SH2D4BQ5SQS7 431 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 KRT25Q7Z3Z0 450 aa11.23□□□□□ -0.61
GTF3C1-202ENST00000561623 TTC36A6NLP5 189 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 THAP12O43422 761 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 ADCY7P51828 1080 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 PPP2R5CQ13362 524 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 CASP8Q14790 479 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 ZKSCAN8Q15776 578 aaPredicted RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 DCUN1D2Q6PH85 259 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 TAB3Q8N5C8 712 aaPredicted RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 CCT6BQ92526 530 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 DDX17Q92841 729 aaKnown RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 EAF2Q96CJ1 260 aaPredicted RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 EYA3Q99504 573 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 A2MP01023 1474 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 TCOF1Q13428 1488 aaKnown RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 KIF24Q5T7B8 1368 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 RPN1P04843 607 aaKnown RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 PDIA3P30101 505 aaKnown RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 LRRC43Q8N309 656 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 CCDC89Q8N998 374 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 USP44Q9H0E7 712 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 SETSIPP0DME0 302 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 SNX16P57768 344 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 NNTQ13423 1086 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 INTS9Q9NV88 658 aaKnown RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 GINS2Q9Y248 185 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 TACC3Q9Y6A5 838 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 FAM135BQ49AJ0 1406 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 HEXIM1O94992 359 aaKnown RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 IFNB1P01574 187 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 BCRP11274 1271 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 TECP42680 631 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 GCKRQ14397 625 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 SLC39A2Q9NP94 309 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 DENND2AQ9ULE3 1009 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 PTPN22Q9Y2R2 807 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 UHRF1BP1Q6BDS2 1440 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 ZMYM6O95789 1325 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 LARGE1O95461 756 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 MAN1A1P33908 653 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 RBBP5Q15291 538 aaKnown RBP11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 TRIML1Q8N9V2 468 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 DNM3Q9UQ16 869 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 INSRP06213 1382 aa11.22□□□□□ -0.61
GTF3C1-202ENST00000561623 PFDN1O60925 122 aa11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 ATXN8OSP0DMR3 200 aa11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 ZNF654Q8IZM8 581 aa11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 GPBP1L1Q9HC44 474 aaPredicted RBP11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 RTEL1Q9NZ71 1219 aa11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 ARHGEF35A5YM69 484 aa11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 TRIM37O94972 964 aa11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 HSPD1P10809 573 aaKnown RBP11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 EPHB4P54760 987 aa11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 MRPS25P82663 173 aaKnown RBP11.21□□□□□ -0.61
GTF3C1-202ENST00000561623 SLC7A5Q01650 507 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms