RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 PDE11AQ9HCR9 933 aa13.02□□□□□ -0.32
SYNE1-234ENST00000536990 ATP8A2Q9NTI2 1148 aa13.02□□□□□ -0.32
SYNE1-234ENST00000536990 TAB2Q9NYJ8 693 aa13.02□□□□□ -0.32
SYNE1-234ENST00000536990 TFCP2L1Q9NZI6 479 aa13.02□□□□□ -0.32
SYNE1-234ENST00000536990 NMT2O60551 498 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 EVX2Q03828 476 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 SPAG1Q07617 926 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 TRIM14Q14142 442 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 NYXQ9GZU5 481 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 ADAMTS3O15072 1205 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 ERLIN1O75477 346 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 NLRP5P59047 1200 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 VSNL1P62760 191 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 NELFBQ8WX92 580 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 ANKRD2Q9GZV1 360 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 SUGCTQ9HAC7 445 aa13.02□□□□□ -0.33
SYNE1-234ENST00000536990 REXO2Q9Y3B8 237 aaKnown RBP13.02□□□□□ -0.33
SYNE1-234ENST00000536990 KCNJ18B7U540 433 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 RHOXF2BP0C7M4 288 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 PRDX5P30044 214 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 TRAPPC10P48553 1259 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 RAD51AP2Q09MP3 1159 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 KCNJ12Q14500 433 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 MCM6Q14566 821 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 ZNF658Q5TYW1 1059 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-234ENST00000536990 SMIM5Q71RC9 77 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 IRF2BP1Q8IU81 584 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 NUP88Q99567 741 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-234ENST00000536990 SLF1Q9BQI6 1058 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 RHOXF2Q9BQY4 288 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 PDS5AQ29RF7 1337 aaKnown RBP13.01□□□□□ -0.33
SYNE1-234ENST00000536990 CTAGE15A4D2H0 777 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 TSPY2A6NKD2 308 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 CTAGE8P0CG41 777 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 SCG2P13521 617 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 KRT9P35527 623 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 PIP4K2BP78356 416 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 ZSCAN26Q16670 478 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 CTAGE6Q86UF2 777 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 CTAGE4Q8IX94 777 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 NOA1Q8NC60 698 aaKnown RBP13.01□□□□□ -0.33
SYNE1-234ENST00000536990 SETDB2Q96T68 719 aa13.01□□□□□ -0.33
SYNE1-234ENST00000536990 PYM1Q9BRP8 204 aaKnown RBP13.01□□□□□ -0.33
SYNE1-234ENST00000536990 ARPP21Q9UBL0 812 aaPredicted RBP13.01□□□□□ -0.33
SYNE1-234ENST00000536990 CYP2D6P10635 497 aa13□□□□□ -0.33
SYNE1-234ENST00000536990 PIK3AP1Q6ZUJ8 805 aa13□□□□□ -0.33
SYNE1-234ENST00000536990 NBPF5PQ86XG9 351 aaPredicted RBP13□□□□□ -0.33
SYNE1-234ENST00000536990 CHP1Q99653 195 aa13□□□□□ -0.33
SYNE1-234ENST00000536990 CNTNAP4Q9C0A0 1308 aa13□□□□□ -0.33
SYNE1-234ENST00000536990 RGL2O15211 777 aa13□□□□□ -0.33
SYNE1-234ENST00000536990 VEGFAP15692 232 aaPredicted RBP13□□□□□ -0.33
SYNE1-234ENST00000536990 SBK1Q52WX2 424 aa13□□□□□ -0.33
SYNE1-234ENST00000536990 C4orf32Q8N8J7 132 aa13□□□□□ -0.33
SYNE1-234ENST00000536990 MYO6Q9UM54 1294 aa13□□□□□ -0.33
SYNE1-234ENST00000536990 GDAQ9Y2T3 454 aa13□□□□□ -0.33
SYNE1-234ENST00000536990 N4BP1O75113 896 aaKnown RBP12.99□□□□□ -0.33
SYNE1-234ENST00000536990 RPN1P04843 607 aaKnown RBP12.99□□□□□ -0.33
SYNE1-234ENST00000536990 MCM7P33993 719 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 PRCPP42785 496 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 LMAN1P49257 510 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 ANKRD20A12PQ8NF67 263 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 TRERF1Q96PN7 1200 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 NARFQ9UHQ1 456 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 EPN1Q9Y6I3 576 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-234ENST00000536990 KIF5BP33176 963 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 PFKFB3Q16875 520 aaPredicted RBP12.99□□□□□ -0.33
SYNE1-234ENST00000536990 WWC2Q6AWC2 1192 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 GOLGA5Q8TBA6 731 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 RMND1Q9NWS8 449 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 MCM9Q9NXL9 1143 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 VPS18Q9P253 973 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 SRP68Q9UHB9 627 aaKnown RBP12.99□□□□□ -0.33
SYNE1-234ENST00000536990 CCDC88AQ3V6T2 1871 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 NDUFA10O95299 355 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 UBXN1Q04323 297 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 CASP8Q14790 479 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 NCAPH2Q6IBW4 605 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 CCDC24Q8N4L8 307 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 TRIM10Q9UDY6 481 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 JAG2Q9Y219 1238 aa12.99□□□□□ -0.33
SYNE1-234ENST00000536990 TTC26A0AVF1 554 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 H7C1D1 291 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 ZPR1O75312 459 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 EIF3JO75822 258 aaKnown RBP12.98□□□□□ -0.33
SYNE1-234ENST00000536990 TUBBP07437 444 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 FAM98CQ17RN3 349 aaKnown RBP12.98□□□□□ -0.33
SYNE1-234ENST00000536990 ARL6IP4Q66PJ3 421 aaKnown RBP12.98□□□□□ -0.33
SYNE1-234ENST00000536990 SPTY2D1Q68D10 685 aaPredicted RBP12.98□□□□□ -0.33
SYNE1-234ENST00000536990 WDR93Q6P2C0 686 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 TPTE2Q6XPS3 522 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 TRAPPC11Q7Z392 1133 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 DZIP1Q86YF9 867 aaKnown RBP12.98□□□□□ -0.33
SYNE1-234ENST00000536990 ADSSL1Q8N142 457 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 DNAJC7Q99615 494 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 GBP3Q9H0R5 595 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 MAPK8IP1Q9UQF2 711 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 LAMB1P07942 1786 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 PARP1P09874 1014 aaKnown RBP12.98□□□□□ -0.33
SYNE1-234ENST00000536990 SLC20A2Q08357 652 aa12.98□□□□□ -0.33
SYNE1-234ENST00000536990 TMED8Q6PL24 325 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms