RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 POTEFA5A3E0 1075 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 ADCY3O60266 1144 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 TFRCP02786 760 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 CCT2P78371 535 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 TMEM67Q5HYA8 995 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 UTP14CQ5TAP6 766 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 FOXD4L1Q9NU39 408 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 PNMA3Q9UL41 463 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 HPS5Q9UPZ3 1129 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 TACC3Q9Y6A5 838 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 GNAT2P19087 354 aa9.15□□□□□ -0.95
LIMCH1-219ENST00000514096 ERCC3P19447 782 aa9.15□□□□□ -0.95
LIMCH1-219ENST00000514096 GUCY1A2P33402 732 aa9.15□□□□□ -0.95
LIMCH1-219ENST00000514096 INHBEP58166 350 aa9.15□□□□□ -0.95
LIMCH1-219ENST00000514096 IFIT1BQ5T764 474 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-219ENST00000514096 ESR2Q92731 530 aa9.15□□□□□ -0.95
LIMCH1-219ENST00000514096 ZSWIM5Q9P217 1185 aa9.15□□□□□ -0.95
LIMCH1-219ENST00000514096 AGTPBP1Q9UPW5 1226 aa9.15□□□□□ -0.95
LIMCH1-219ENST00000514096 CYP21A2P08686 494 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 TM4SF4P48230 202 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 AKNAD1Q5T1N1 836 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 GPRC5AQ8NFJ5 357 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 JAKMIP1Q96N16 626 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 BTBD7Q9P203 1132 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 CXCL11O14625 94 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 FCGRTP55899 365 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 PABPC4Q13310 644 aaKnown RBP eCLIP9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 FAM212AQ96EL1 285 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 ERO1AQ96HE7 468 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 GOPCQ9HD26 462 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 USP17L15C9J2P7 530 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 USP17L13C9JLJ4 530 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 USP17L11C9JVI0 530 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 USP17L18D6R9N7 530 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 USP17L22D6RA61 530 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 USP17L17D6RBQ6 530 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 USP17L19D6RCP7 530 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 USP17L20D6RJB6 530 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 TTLL1O95922 423 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 CFBP00751 764 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 USP17L24Q0WX57 530 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 COG2Q14746 738 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 GPAT2Q6NUI2 795 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 HELLSQ9NRZ9 838 aa9.14□□□□□ -0.95
LIMCH1-219ENST00000514096 CDH23Q9H251 3354 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 CCDC66A2RUB6 948 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 ZSCAN20P17040 1043 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 SYN1P17600 705 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 GRK4P32298 578 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 GJC2Q5T442 439 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 C16orf86Q6ZW13 317 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 STAP2Q9UGK3 403 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 RIPK3Q9Y572 518 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 TNKSO95271 1327 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 A0A0G2JLL6 359 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 BMP3P12645 472 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 ERVK-9P63128 1117 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 ERVK-24P63145 666 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 PRRT2Q7Z6L0 340 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 TSC1Q92574 1164 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 TMEM47Q9BQJ4 181 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 VCPKMTQ9H867 229 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 SH3BP1Q9Y3L3 701 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 STAG2Q8N3U4 1231 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 PNMA1Q8ND90 353 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 TIGD1Q96MW7 591 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 MTMR4Q9NYA4 1195 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 RBPJLQ9UBG7 517 aa9.13□□□□□ -0.95
LIMCH1-219ENST00000514096 FOXP2O15409 715 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 CDC45O75419 566 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 ATP2B1P20020 1258 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 STAT3P40763 770 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 USP14P54578 494 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 KCTD2Q14681 263 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 MAP3K11Q16584 847 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 ADCK5Q3MIX3 580 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 CYB5R4Q7L1T6 521 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 CCDC94Q9BW85 323 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 UNC93B1Q9H1C4 597 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 IL17RBQ9NRM6 502 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 SWAP70Q9UH65 585 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 CCPG1Q9ULG6 757 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 U3KPZ7 1027 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 CCDC69A6NI79 296 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 CSPG5O95196 566 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 ZKSCAN1P17029 563 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 HOXA13P31271 388 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 SSR1P43307 286 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 CNTN2Q02246 1040 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 NBPF11Q86T75 865 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 PRPF38AQ8NAV1 312 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 ESYT1Q9BSJ8 1104 aa9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 PRDM5Q9NQX1 630 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-219ENST00000514096 SPDYE16A6NNV3 312 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 PRC1O43663 620 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 MYCLP12524 364 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 CASTP20810 708 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 WTAPQ15007 396 aa9.11□□□□□ -0.95
LIMCH1-219ENST00000514096 SIAH1Q8IUQ4 282 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms