RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 TEX2Q8IWB9 1127 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 SPATA31A6Q5VVP1 1343 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 CARMIL3Q8ND23 1372 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 SPDYE3A6NKU9 549 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 TNNI2P48788 182 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 MXRA7P84157 204 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 GPR162Q16538 588 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 VWA3BQ502W6 1294 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 TYW1BQ6NUM6 668 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 STK38LQ9Y2H1 464 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 ERBB3P21860 1342 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 H2AFXP16104 143 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-211ENST00000513346 ALDH1B1P30837 517 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 NNTQ13423 1086 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 NCAPH2Q6IBW4 605 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 TOGARAM2Q6ZUX3 1019 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 CEP63Q96MT8 703 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 SMC6Q96SB8 1091 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 TRIM31Q9BZY9 425 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 ARMT1Q9H993 441 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 KCNJ14Q9UNX9 436 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 POLR1AO95602 1720 aaPredicted RBP12.44□□□□□ -0.42
TCOF1-211ENST00000513346 H7C1D1 291 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 CYP21A2P08686 494 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 SETSIPP0DME0 302 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 COPB1P53618 953 aaKnown RBP12.44□□□□□ -0.42
TCOF1-211ENST00000513346 EIF6P56537 245 aaKnown RBP12.44□□□□□ -0.42
TCOF1-211ENST00000513346 SLC20A2Q08357 652 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 TTC38Q5R3I4 469 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 GNA11P29992 359 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 ARMC9Q7Z3E5 817 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 C2CD5Q86YS7 1000 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 E9PCH4 1651 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 GUCY2DQ02846 1103 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 BLZF1Q9H2G9 400 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 L2HGDHQ9H9P8 463 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 MTUS1Q9ULD2 1270 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 FHOD1Q9Y613 1164 aa12.44□□□□□ -0.42
TCOF1-211ENST00000513346 REREQ9P2R6 1566 aa12.43□□□□□ -0.42
TCOF1-211ENST00000513346 LRRD1A4D1F6 860 aa12.43□□□□□ -0.42
TCOF1-211ENST00000513346 BRD2P25440 801 aaKnown RBP12.43□□□□□ -0.42
TCOF1-211ENST00000513346 DPP8Q6V1X1 898 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-211ENST00000513346 CCDC197Q8NCU1 140 aa12.43□□□□□ -0.42
TCOF1-211ENST00000513346 SAP30BPQ9UHR5 308 aaKnown RBP12.43□□□□□ -0.42
TCOF1-211ENST00000513346 CNNM4Q6P4Q7 775 aa12.43□□□□□ -0.42
TCOF1-211ENST00000513346 TCP11Q8WWU5 503 aa12.43□□□□□ -0.42
TCOF1-211ENST00000513346 HGSO14964 777 aaPredicted RBP12.43□□□□□ -0.42
TCOF1-211ENST00000513346 TRIM68Q6AZZ1 485 aa12.43□□□□□ -0.42
TCOF1-211ENST00000513346 GOLPH3LQ9H4A5 285 aa12.43□□□□□ -0.42
TCOF1-211ENST00000513346 SUFUQ9UMX1 484 aa12.43□□□□□ -0.42
TCOF1-211ENST00000513346 RGS16O15492 202 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 ARID4AP29374 1257 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 ADD1P35611 737 aaKnown RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 FMR1NBQ8N0W7 255 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 SAMSN1Q9NSI8 373 aaKnown RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 IKBKGQ9Y6K9 419 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 MROH5Q6ZUA9 1318 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 HSPD1P10809 573 aaKnown RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 NR1D1P20393 614 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 RPS8P62241 208 aaKnown RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 LRRC24Q50LG9 513 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 DAAM2Q86T65 1068 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 RAB3IPQ96QF0 476 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 MYL10Q9BUA6 226 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 MAN1B1Q9UKM7 699 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 ALKQ9UM73 1620 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 GGCXP38435 758 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 CORO7P57737 925 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 PLS1Q14651 629 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 KRT79Q5XKE5 535 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 EMBQ6PCB8 327 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 GSDMAQ96QA5 445 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 WDR24Q96S15 920 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 TRAF5O00463 557 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 PRDM1O75626 825 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 PDCLQ13371 301 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 DENND2CQ68D51 928 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 RRAGAQ7L523 313 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 ZNF589Q86UQ0 364 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 FNBP4Q8N3X1 1017 aaPredicted RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 NUCKS1Q9H1E3 243 aaKnown RBP12.42□□□□□ -0.42
TCOF1-211ENST00000513346 GJA3Q9Y6H8 435 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 ABCA6Q8N139 1617 aa12.42□□□□□ -0.42
TCOF1-211ENST00000513346 ADGRB3O60242 1522 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 LOC102724428A0A0B4J2F2 783 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 SMIM24O75264 130 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 SIK1P57059 783 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 HIBCHQ6NVY1 386 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-211ENST00000513346 CCDC174Q6PII3 467 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 BICD1Q96G01 975 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 COPRSQ9NQ92 184 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 TMEM232C9JQI7 657 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 PARP1P09874 1014 aaKnown RBP12.41□□□□□ -0.42
TCOF1-211ENST00000513346 KIF23Q02241 960 aaPredicted RBP12.41□□□□□ -0.42
TCOF1-211ENST00000513346 SV2BQ7L1I2 683 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 GBP5Q96PP8 586 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 RAB17Q9H0T7 212 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 HOMER2Q9NSB8 354 aa12.41□□□□□ -0.42
TCOF1-211ENST00000513346 HOMER3Q9NSC5 361 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms