RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CACYBPQ9HB71 228 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 BIN2Q9UBW5 565 aaPredicted RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 FBXL5Q9UKA1 691 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 PDZRN3Q9UPQ7 1066 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 UBR1Q8IWV7 1749 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 ANKRD36BQ8N2N9 1353 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 FAM25AB3EWG3 89 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 FAM25CB3EWG5 89 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 FAM25GB3EWG6 89 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 TRIM16O95361 564 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 TRPC1P48995 793 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 UBASH3AP57075 661 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 AP1B1Q10567 949 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 PSMD2Q13200 908 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 NONOQ15233 471 aaKnown RBP eCLIP3.93□□□□□ -1.78
USP53-205ENST00000509769 TMEM266Q2M3C6 531 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 SEL1L2Q5TEA6 688 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 FBXO31Q5XUX0 539 aaPredicted RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 RINLQ6ZS11 566 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 SESTD1Q86VW0 696 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 WDR75Q8IWA0 830 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 GRK7Q8WTQ7 553 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 PSPC1Q8WXF1 523 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 EHMT1Q9H9B1 1298 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 TXNDC16Q9P2K2 825 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 ATP11BQ9Y2G3 1177 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 U3KPZ7 1027 aaPredicted RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 PHLPP2Q6ZVD8 1323 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 COL22A1Q8NFW1 1626 aaPredicted RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 ABCC11Q96J66 1382 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 GOLGA8IPA6NC78 632 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 POTEMA6NI47 508 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 GOLGA8RI6L899 631 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 ELL2O00472 640 aaPredicted RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 MAP3K13O43283 966 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 AKR1B10O60218 316 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 COPB1P53618 953 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 CDR2Q01850 454 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 KRT17Q04695 432 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 CUL4BQ13620 913 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 CTTNQ14247 550 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 POTEHQ6S545 545 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 POTEGQ6S5H5 508 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 LUZP2Q86TE4 346 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 CERS3Q8IU89 383 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 OR9Q1Q8NGQ5 310 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 SCG3Q8WXD2 468 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 LRRC37BQ96QE4 947 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 FAM192AQ9GZU8 254 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 EPC1Q9H2F5 836 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 KLHL31Q9H511 634 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 ZNF287Q9HBT7 754 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 PARVAQ9NVD7 372 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 ANAPC5Q9UJX4 755 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 SCAF8Q9UPN6 1271 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 PTPRCP08575 1304 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 PITPNM2Q9BZ72 1349 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 A0A087WZG4 1122 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 GOLGA8MH3BSY2 632 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 ABLIM1O14639 778 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 ATP2C2O75185 946 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 GAS8O95995 478 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 XPAP23025 273 aaPredicted RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 COPB2P35606 906 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 GNGT1P63211 74 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 NR1H3Q13133 447 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 KPNB1Q14974 876 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 TERF2Q15554 542 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 LRRC36Q1X8D7 754 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 RCSD1Q6JBY9 416 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 CYP26C1Q6V0L0 522 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 GDAP1Q8TB36 358 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 PPP4R1Q8TF05 950 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 RASSF5Q8WWW0 418 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 EDEM3Q9BZQ6 932 aa3.93□□□□□ -1.78
USP53-205ENST00000509769 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 MRPL11Q9Y3B7 192 aaKnown RBP3.93□□□□□ -1.78
USP53-205ENST00000509769 C16orf96A6NNT2 1141 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 ZNF839A8K0R7 811 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 FOXP2O15409 715 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 SART1O43290 800 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 MYCNP04198 464 aaPredicted RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 ACADSP16219 412 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 GARSP41250 739 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 BIRC3Q13489 604 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CDC37Q16543 378 aaPredicted RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 THOC7Q6I9Y2 204 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 PRR23CQ6ZRP0 262 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 SUGP1Q8IWZ8 645 aaKnown RBP3.92□□□□□ -1.78
USP53-205ENST00000509769 TRIML2Q8N7C3 387 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CALML6Q8TD86 181 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 BCAS4Q8TDM0 211 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 CCT6BQ92526 530 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 COQ7Q99807 217 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 VPS37BQ9H9H4 285 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 TPCN1Q9ULQ1 816 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 E7EVH7 732 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 TOMM70O94826 608 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 SYT1P21579 422 aa3.92□□□□□ -1.78
USP53-205ENST00000509769 SERPINB1P30740 379 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms