RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 SLC1A4P43007 532 aa16.41■□□□□ 0.22
SYNE1-226ENST00000488376 SLC4A3P48751 1232 aa16.41■□□□□ 0.22
SYNE1-226ENST00000488376 IMMTQ16891 758 aaKnown RBP16.41■□□□□ 0.22
SYNE1-226ENST00000488376 SNRNP48Q6IEG0 339 aaKnown RBP16.41■□□□□ 0.22
SYNE1-226ENST00000488376 TTBK2Q6IQ55 1244 aa16.41■□□□□ 0.22
SYNE1-226ENST00000488376 CPXCR1Q8N123 301 aa16.41■□□□□ 0.22
SYNE1-226ENST00000488376 RNF41Q9H4P4 317 aaPredicted RBP16.41■□□□□ 0.22
SYNE1-226ENST00000488376 MROH8Q9H579 483 aa16.41■□□□□ 0.22
SYNE1-226ENST00000488376 SLC38A10Q9HBR0 1119 aa16.41■□□□□ 0.22
SYNE1-226ENST00000488376 FEM1BQ9UK73 627 aa16.41■□□□□ 0.22
SYNE1-226ENST00000488376 FRMPD2Q68DX3 1309 aaPredicted RBP16.41■□□□□ 0.22
SYNE1-226ENST00000488376 IGHA2P01877 340 aa16.4■□□□□ 0.22
SYNE1-226ENST00000488376 PGK2P07205 417 aa16.4■□□□□ 0.22
SYNE1-226ENST00000488376 CYP21A2P08686 494 aa16.4■□□□□ 0.22
SYNE1-226ENST00000488376 HOXC6P09630 235 aa16.4■□□□□ 0.22
SYNE1-226ENST00000488376 TOP1P11387 765 aaKnown RBP16.4■□□□□ 0.22
SYNE1-226ENST00000488376 PCP11498 1178 aaKnown RBP16.4■□□□□ 0.22
SYNE1-226ENST00000488376 RUFY2Q8WXA3 655 aa16.4■□□□□ 0.22
SYNE1-226ENST00000488376 ESR2Q92731 530 aa16.4■□□□□ 0.22
SYNE1-226ENST00000488376 ZSWIM5Q9P217 1185 aa16.4■□□□□ 0.22
SYNE1-226ENST00000488376 CTNNA3Q9UI47 895 aa16.4■□□□□ 0.22
SYNE1-226ENST00000488376 ZNF236Q9UL36 1845 aa16.4■□□□□ 0.22
SYNE1-226ENST00000488376 KIAA0100Q14667 2235 aaKnown RBP16.39■□□□□ 0.22
SYNE1-226ENST00000488376 SGPL1O95470 568 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 SLC25A27O95847 323 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 CYP2C19P33261 490 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 SLC16A2P36021 539 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 STAT2P52630 851 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 CCDC96Q2M329 555 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 STOX1Q6ZVD7 989 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 CYB5R4Q7L1T6 521 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 UBE2Q1Q7Z7E8 422 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 TRPV1Q8NER1 839 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 TEX13BQ9BXU2 312 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 ZNF536O15090 1300 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 RPTORQ8N122 1335 aa16.39■□□□□ 0.21
SYNE1-226ENST00000488376 STRNO43815 780 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 ZBED4O75132 1171 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 FCER1AP12319 257 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 IKQ13123 557 aaPredicted RBP16.38■□□□□ 0.21
SYNE1-226ENST00000488376 COL9A3Q14050 684 aaPredicted RBP16.38■□□□□ 0.21
SYNE1-226ENST00000488376 BMP2KLQ5H9B9 411 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 PPP4R3BQ5MIZ7 849 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 DPP9Q86TI2 863 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 ENAHQ8N8S7 591 aaPredicted RBP16.38■□□□□ 0.21
SYNE1-226ENST00000488376 AGBL1Q96MI9 1066 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 MMP19Q99542 508 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 ESYT1Q9BSJ8 1104 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 CRISPLD2Q9H0B8 497 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 HMX1Q9NP08 348 aaPredicted RBP16.38■□□□□ 0.21
SYNE1-226ENST00000488376 GPCPD1Q9NPB8 672 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 PRR12Q9ULL5 1215 aa16.38■□□□□ 0.21
SYNE1-226ENST00000488376 ATP2A1O14983 1001 aa16.37■□□□□ 0.21
SYNE1-226ENST00000488376 PDHBP11177 359 aa16.37■□□□□ 0.21
SYNE1-226ENST00000488376 CCDC174Q6PII3 467 aa16.37■□□□□ 0.21
SYNE1-226ENST00000488376 TRMT44Q8IYL2 757 aaKnown RBP16.37■□□□□ 0.21
SYNE1-226ENST00000488376 ABRAQ8N0Z2 381 aa16.37■□□□□ 0.21
SYNE1-226ENST00000488376 DIS3LQ8TF46 1054 aaKnown RBP16.37■□□□□ 0.21
SYNE1-226ENST00000488376 DCAF4Q8WV16 495 aa16.37■□□□□ 0.21
SYNE1-226ENST00000488376 MAP4K1Q92918 833 aa16.37■□□□□ 0.21
SYNE1-226ENST00000488376 ZSCAN10Q96SZ4 725 aaPredicted RBP16.37■□□□□ 0.21
SYNE1-226ENST00000488376 LSG1Q9H089 658 aaKnown RBP16.37■□□□□ 0.21
SYNE1-226ENST00000488376 CPVLQ9H3G5 476 aa16.37■□□□□ 0.21
SYNE1-226ENST00000488376 HOMER2Q9NSB8 354 aa16.37■□□□□ 0.21
SYNE1-226ENST00000488376 RBM8AQ9Y5S9 174 aaKnown RBP16.37■□□□□ 0.21
SYNE1-226ENST00000488376 TFRCP02786 760 aaKnown RBP16.36■□□□□ 0.21
SYNE1-226ENST00000488376 GOLGA8HP0CJ92 632 aa16.36■□□□□ 0.21
SYNE1-226ENST00000488376 MNX1P50219 401 aaPredicted RBP16.36■□□□□ 0.21
SYNE1-226ENST00000488376 PRAMEF19Q5SWL8 479 aa16.36■□□□□ 0.21
SYNE1-226ENST00000488376 FAM160B2Q86V87 743 aa16.36■□□□□ 0.21
SYNE1-226ENST00000488376 CHURC1Q8WUH1 139 aa16.36■□□□□ 0.21
SYNE1-226ENST00000488376 MAML3Q96JK9 1138 aa16.36■□□□□ 0.21
SYNE1-226ENST00000488376 TTC14Q96N46 770 aa16.36■□□□□ 0.21
SYNE1-226ENST00000488376 SENP2Q9HC62 589 aa16.36■□□□□ 0.21
SYNE1-226ENST00000488376 U3KPZ7 1027 aaPredicted RBP16.36■□□□□ 0.21
SYNE1-226ENST00000488376 TNKSO95271 1327 aa16.36■□□□□ 0.21
SYNE1-226ENST00000488376 E7EWF7 191 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 PLA2G6O60733 806 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 FARP2O94887 1054 aaPredicted RBP16.35■□□□□ 0.21
SYNE1-226ENST00000488376 NEFLP07196 543 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 SNHG28P0DPA3 235 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 ZNF543Q08ER8 600 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 ZNF792Q3KQV3 632 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 MFSD14CQ5VZR4 134 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 LHX8Q68G74 356 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 BTNL9Q6UXG8 535 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 DGKHQ86XP1 1220 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 KRT23Q9C075 422 aa16.35■□□□□ 0.21
SYNE1-226ENST00000488376 CTDP1Q9Y5B0 961 aaPredicted RBP16.35■□□□□ 0.21
SYNE1-226ENST00000488376 CYBAP13498 195 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 KCTD2Q14681 263 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 SEC23AQ15436 765 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 MUM1L1Q5H9M0 696 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 SYDE2Q5VT97 1194 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 OLFML2BQ68BL8 750 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 CHST3Q7LGC8 479 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 IQCA1Q86XH1 822 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 PNMA1Q8ND90 353 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 ANKS1AQ92625 1134 aa16.34■□□□□ 0.21
SYNE1-226ENST00000488376 FGD4Q96M96 766 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms