RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 IREB2P48200 963 aaKnown RBP8.73□□□□□ -1.01
USP40-202ENST00000409945 TMEM201Q5SNT2 666 aa8.73□□□□□ -1.01
USP40-202ENST00000409945 LARP1BQ659C4 914 aaKnown RBP8.73□□□□□ -1.01
USP40-202ENST00000409945 MRM1Q6IN84 353 aaKnown RBP8.73□□□□□ -1.01
USP40-202ENST00000409945 TMEM130Q8N3G9 435 aa8.73□□□□□ -1.01
USP40-202ENST00000409945 RNF214Q8ND24 703 aa8.73□□□□□ -1.01
USP40-202ENST00000409945 KANSL2Q9H9L4 492 aa8.73□□□□□ -1.01
USP40-202ENST00000409945 ANKARQ7Z5J8 1434 aa8.73□□□□□ -1.01
USP40-202ENST00000409945 FMN2Q9NZ56 1722 aa8.73□□□□□ -1.01
USP40-202ENST00000409945 K7ELQ4 463 aaPredicted RBP8.72□□□□□ -1.01
USP40-202ENST00000409945 NLRC3Q7RTR2 1065 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 NLGN1Q8N2Q7 840 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 BEND7Q8N7W2 519 aaPredicted RBP8.72□□□□□ -1.01
USP40-202ENST00000409945 XAGE3Q8WTP9 111 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 AKTIPQ9H8T0 292 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 CLSPNQ9HAW4 1339 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 CENPJQ9HC77 1338 aaPredicted RBP8.72□□□□□ -1.01
USP40-202ENST00000409945 ADGRB2O60241 1585 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 SPATA31C1P0DKV0 1188 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 NME1P15531 152 aaKnown RBP8.72□□□□□ -1.01
USP40-202ENST00000409945 GLB1P16278 677 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 ASPAP45381 313 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 PRRT3Q5FWE3 981 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 ZNF772Q68DY9 489 aaPredicted RBP8.72□□□□□ -1.01
USP40-202ENST00000409945 FDX2Q6P4F2 183 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 C6orf15Q6UXA7 325 aaPredicted RBP8.72□□□□□ -1.01
USP40-202ENST00000409945 JAZF1Q86VZ6 243 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 LENG1Q96BZ8 264 aaPredicted RBP8.72□□□□□ -1.01
USP40-202ENST00000409945 MEGF10Q96KG7 1140 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 CYP4F12Q9HCS2 524 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 PICK1Q9NRD5 415 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 FAM86C1Q9NVL1 165 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 SNTG2Q9NY99 539 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 ACTR10Q9NZ32 417 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 GPRASP1Q5JY77 1395 aa8.72□□□□□ -1.01
USP40-202ENST00000409945 SYNGAP1Q96PV0 1343 aa8.71□□□□□ -1.01
USP40-202ENST00000409945 FANCGO15287 622 aa8.71□□□□□ -1.02
USP40-202ENST00000409945 RAB6AP20340 208 aa8.71□□□□□ -1.02
USP40-202ENST00000409945 GUCY2CP25092 1073 aa8.71□□□□□ -1.02
USP40-202ENST00000409945 MBTPS1Q14703 1052 aa8.71□□□□□ -1.02
USP40-202ENST00000409945 SGO2Q562F6 1265 aa8.71□□□□□ -1.02
USP40-202ENST00000409945 PRAMEF13Q5VWM6 474 aa8.71□□□□□ -1.02
USP40-202ENST00000409945 MCATQ8IVS2 390 aaKnown RBP8.71□□□□□ -1.02
USP40-202ENST00000409945 NGDNQ8NEJ9 315 aaKnown RBP8.71□□□□□ -1.02
USP40-202ENST00000409945 TMEM87BQ96K49 555 aa8.71□□□□□ -1.02
USP40-202ENST00000409945 TRIM55Q9BYV6 548 aa8.71□□□□□ -1.02
USP40-202ENST00000409945 CNNM2Q9H8M5 875 aa8.71□□□□□ -1.02
USP40-202ENST00000409945 CASP7P55210 303 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 DDR2Q16832 855 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 UNC5AQ6ZN44 842 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 Q6ZS46 218 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 KRT28Q7Z3Y7 464 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 FAM177A1Q8N128 213 aaPredicted RBP8.7□□□□□ -1.02
USP40-202ENST00000409945 FBLIM1Q8WUP2 373 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 WFDC12Q8WWY7 111 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 DDX17Q92841 729 aaKnown RBP8.7□□□□□ -1.02
USP40-202ENST00000409945 ARHGEF28Q8N1W1 1705 aaKnown RBP8.7□□□□□ -1.02
USP40-202ENST00000409945 EIF4EBP3O60516 100 aaPredicted RBP8.7□□□□□ -1.02
USP40-202ENST00000409945 UBOX5O94941 541 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 GJB6O95452 261 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 IMPDH2P12268 514 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 CHRNA4P43681 627 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 CDCP2Q5VXM1 449 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 PODNQ7Z5L7 613 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 FAM13CQ8NE31 585 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 SEMA6CQ9H3T2 930 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 MAPK8IP1Q9UQF2 711 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 MSRB2Q9Y3D2 182 aa8.7□□□□□ -1.02
USP40-202ENST00000409945 TULP4Q9NRJ4 1543 aa8.69□□□□□ -1.02
USP40-202ENST00000409945 PNPLA6Q8IY17 1366 aa8.69□□□□□ -1.02
USP40-202ENST00000409945 RNGTTO60942 597 aaKnown RBP8.69□□□□□ -1.02
USP40-202ENST00000409945 NRG1Q02297 640 aaPredicted RBP8.69□□□□□ -1.02
USP40-202ENST00000409945 TMEM192Q8IY95 271 aa8.69□□□□□ -1.02
USP40-202ENST00000409945 ARMC10Q8N2F6 343 aa8.69□□□□□ -1.02
USP40-202ENST00000409945 RIN3Q8TB24 985 aa8.69□□□□□ -1.02
USP40-202ENST00000409945 KIF2CQ99661 725 aa8.69□□□□□ -1.02
USP40-202ENST00000409945 CARD11Q9BXL7 1154 aa8.69□□□□□ -1.02
USP40-202ENST00000409945 NOP53Q9NZM5 478 aaKnown RBP8.69□□□□□ -1.02
USP40-202ENST00000409945 MRPL42Q9Y6G3 142 aaKnown RBP8.69□□□□□ -1.02
USP40-202ENST00000409945 EVC2Q86UK5 1308 aa8.69□□□□□ -1.02
USP40-202ENST00000409945 ITSN1Q15811 1721 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 ARHGEF10O15013 1369 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 KRBA1A5PL33 1030 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 SPDYE3A6NKU9 549 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 NFICP08651 508 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 PDE4BQ07343 736 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 MRPL41Q8IXM3 137 aaKnown RBP8.68□□□□□ -1.02
USP40-202ENST00000409945 SMYD4Q8IYR2 804 aaPredicted RBP8.68□□□□□ -1.02
USP40-202ENST00000409945 TM9SF2Q99805 663 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 CDK19Q9BWU1 502 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 ATXN3LQ9H3M9 355 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 ACSS3Q9H6R3 686 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 ADAM30Q9UKF2 790 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 DAGLAQ9Y4D2 1042 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 TACC3Q9Y6A5 838 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 TRPM1Q7Z4N2 1603 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 HP1BP3Q5SSJ5 553 aaPredicted RBP8.68□□□□□ -1.02
USP40-202ENST00000409945 PPFIBP1Q86W92 1011 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 SLFN12Q8IYM2 578 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 BAHD1Q8TBE0 780 aaPredicted RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms