RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 ZNF214Q9UL59 606 aaPredicted RBP23.25■■□□□ 1.31
PDLIM2-207ENST00000409417 GABRQQ9UN88 632 aa23.25■■□□□ 1.31
PDLIM2-207ENST00000409417 ATP2A1O14983 1001 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 PRC1O43663 620 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 ERCC3P19447 782 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 STAT3P40763 770 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 WTAPQ15007 396 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 TMEM67Q5HYA8 995 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 GPATCH4Q5T3I0 446 aaKnown RBP23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 RAET1EQ8TD07 263 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 NEK1Q96PY6 1258 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 USP26Q9BXU7 913 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 MGAMO43451 1857 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 FRMPD2Q68DX3 1309 aaPredicted RBP23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 SLC25A27O95847 323 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 COL9A3Q14050 684 aaPredicted RBP23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 TTBK2Q6IQ55 1244 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 RIOX2Q8IUF8 465 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 TEX13BQ9BXU2 312 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 MROH8Q9H579 483 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 CWC22Q9HCG8 908 aaKnown RBP23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 GPCPD1Q9NPB8 672 aa23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 CTDP1Q9Y5B0 961 aaPredicted RBP23.24■■□□□ 1.31
PDLIM2-207ENST00000409417 DOCK3Q8IZD9 2030 aa23.23■■□□□ 1.31
PDLIM2-207ENST00000409417 OAZ1P54368 228 aa23.23■■□□□ 1.31
PDLIM2-207ENST00000409417 IRF5Q13568 498 aa23.23■■□□□ 1.31
PDLIM2-207ENST00000409417 ADCK5Q3MIX3 580 aa23.23■■□□□ 1.31
PDLIM2-207ENST00000409417 WDR78Q5VTH9 848 aa23.23■■□□□ 1.31
PDLIM2-207ENST00000409417 SOCS4Q8WXH5 440 aa23.23■■□□□ 1.31
PDLIM2-207ENST00000409417 TMEM87BQ96K49 555 aa23.23■■□□□ 1.31
PDLIM2-207ENST00000409417 PRR12Q9ULL5 1215 aa23.23■■□□□ 1.31
PDLIM2-207ENST00000409417 IVNS1ABPQ9Y6Y0 642 aa23.23■■□□□ 1.31
PDLIM2-207ENST00000409417 COPB2P35606 906 aa23.22■■□□□ 1.31
PDLIM2-207ENST00000409417 SLC16A2P36021 539 aa23.22■■□□□ 1.31
PDLIM2-207ENST00000409417 MORN1Q5T089 497 aa23.22■■□□□ 1.31
PDLIM2-207ENST00000409417 NUDT12Q9BQG2 462 aa23.22■■□□□ 1.31
PDLIM2-207ENST00000409417 SENP2Q9HC62 589 aa23.22■■□□□ 1.31
PDLIM2-207ENST00000409417 CENPFP49454 3210 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 SLC15A5A6NIM6 579 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 STRNO43815 780 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 EIF5BO60841 1220 aaKnown RBP23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 HMGB1P09429 215 aaKnown RBP23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 SLC9C1Q4G0N8 1177 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 ASPRV1Q53RT3 343 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 SYDE2Q5VT97 1194 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 SNRNP48Q6IEG0 339 aaKnown RBP23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 NCAPG2Q86XI2 1143 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 CPXCR1Q8N123 301 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 TMTC2Q8N394 836 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 LY9Q9HBG7 655 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 SNX14Q9Y5W7 946 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 WDR19Q8NEZ3 1342 aa23.21■■□□□ 1.31
PDLIM2-207ENST00000409417 PARP1P09874 1014 aaKnown RBP23.2■■□□□ 1.3
PDLIM2-207ENST00000409417 GOLGA8HP0CJ92 632 aa23.2■■□□□ 1.3
PDLIM2-207ENST00000409417 PTPREP23469 700 aa23.2■■□□□ 1.3
PDLIM2-207ENST00000409417 DHX32Q7L7V1 743 aaKnown RBP23.2■■□□□ 1.3
PDLIM2-207ENST00000409417 PXYLP1Q8TE99 480 aa23.2■■□□□ 1.3
PDLIM2-207ENST00000409417 USP6NLQ92738 828 aa23.2■■□□□ 1.3
PDLIM2-207ENST00000409417 ARMC5Q96C12 935 aa23.2■■□□□ 1.3
PDLIM2-207ENST00000409417 RAVER2Q9HCJ3 691 aaKnown RBP23.2■■□□□ 1.3
PDLIM2-207ENST00000409417 GPHNQ9NQX3 736 aaPredicted RBP23.2■■□□□ 1.3
PDLIM2-207ENST00000409417 SH2B2O14492 632 aaPredicted RBP23.19■■□□□ 1.3
PDLIM2-207ENST00000409417 LIFRP42702 1097 aa23.19■■□□□ 1.3
PDLIM2-207ENST00000409417 EXOSC10Q01780 885 aaKnown RBP23.19■■□□□ 1.3
PDLIM2-207ENST00000409417 TROAPQ12815 778 aa23.19■■□□□ 1.3
PDLIM2-207ENST00000409417 GRB14Q14449 540 aa23.19■■□□□ 1.3
PDLIM2-207ENST00000409417 CATIPQ7Z7H3 387 aa23.19■■□□□ 1.3
PDLIM2-207ENST00000409417 NBPF11Q86T75 865 aa23.19■■□□□ 1.3
PDLIM2-207ENST00000409417 ADCY3O60266 1144 aa23.18■■□□□ 1.3
PDLIM2-207ENST00000409417 XRCC5P13010 732 aaKnown RBP23.18■■□□□ 1.3
PDLIM2-207ENST00000409417 GRK4P32298 578 aa23.18■■□□□ 1.3
PDLIM2-207ENST00000409417 ABRAQ8N0Z2 381 aa23.18■■□□□ 1.3
PDLIM2-207ENST00000409417 SLAIN1Q8ND83 568 aa23.18■■□□□ 1.3
PDLIM2-207ENST00000409417 RANBP17Q9H2T7 1088 aaKnown RBP23.18■■□□□ 1.3
PDLIM2-207ENST00000409417 ZNF536O15090 1300 aa23.18■■□□□ 1.3
PDLIM2-207ENST00000409417 COL11A1P12107 1806 aaPredicted RBP23.18■■□□□ 1.3
PDLIM2-207ENST00000409417 RGS2P41220 211 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 MAP2K5Q13163 448 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 JAKMIP1Q96N16 626 aaKnown RBP23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 RIPK3Q9Y572 518 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 GTF3C3Q9Y5Q9 886 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 FCER1AP12319 257 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 CYP2B6P20813 491 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 PSMA5P28066 241 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 SNAP25P60880 206 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 SH3TC2Q8TF17 1288 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 LRRC2Q9BYS8 371 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 UBA5Q9GZZ9 404 aa23.17■■□□□ 1.3
PDLIM2-207ENST00000409417 PALM3A6NDB9 673 aaPredicted RBP23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 ICAM1P05362 532 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 HOXC6P09630 235 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 GRM4Q14833 912 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 CCDC174Q6PII3 467 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 NFXL1Q6ZNB6 911 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 ZNF654Q8IZM8 581 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 ZNF333Q96JL9 665 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 AGBL1Q96MI9 1066 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 APBA2Q99767 749 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 MAD2L2Q9UI95 211 aa23.16■■□□□ 1.3
PDLIM2-207ENST00000409417 CCDC69A6NI79 296 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms