RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 A0A1W2PQC6 194 aa23.75■■□□□ 1.39
UPF3A-202ENST00000375299 PRCPP42785 496 aa23.75■■□□□ 1.39
UPF3A-202ENST00000375299 ZNF662Q6ZS27 426 aa23.75■■□□□ 1.39
UPF3A-202ENST00000375299 ZSCAN10Q96SZ4 725 aaPredicted RBP23.75■■□□□ 1.39
UPF3A-202ENST00000375299 DUOX1Q9NRD9 1551 aa23.75■■□□□ 1.39
UPF3A-202ENST00000375299 LGALS16A8MUM7 142 aa23.74■■□□□ 1.39
UPF3A-202ENST00000375299 SRGAP2O75044 1071 aa23.74■■□□□ 1.39
UPF3A-202ENST00000375299 STIM1Q13586 685 aa23.74■■□□□ 1.39
UPF3A-202ENST00000375299 IRF2BP1Q8IU81 584 aa23.74■■□□□ 1.39
UPF3A-202ENST00000375299 EHBP1Q8NDI1 1231 aa23.74■■□□□ 1.39
UPF3A-202ENST00000375299 ZBTB1Q9Y2K1 713 aa23.74■■□□□ 1.39
UPF3A-202ENST00000375299 TTC31Q49AM3 519 aaPredicted RBP23.74■■□□□ 1.39
UPF3A-202ENST00000375299 IFIT1BQ5T764 474 aaKnown RBP23.74■■□□□ 1.39
UPF3A-202ENST00000375299 CAPN11Q9UMQ6 739 aa23.74■■□□□ 1.39
UPF3A-202ENST00000375299 MAPK8IP1Q9UQF2 711 aa23.74■■□□□ 1.39
UPF3A-202ENST00000375299 BCL9O00512 1426 aa23.74■■□□□ 1.39
UPF3A-202ENST00000375299 KRT83P78385 493 aa23.73■■□□□ 1.39
UPF3A-202ENST00000375299 IL17AQ16552 155 aa23.73■■□□□ 1.39
UPF3A-202ENST00000375299 TSR1Q2NL82 804 aaKnown RBP23.73■■□□□ 1.39
UPF3A-202ENST00000375299 WDR59Q6PJI9 974 aa23.73■■□□□ 1.39
UPF3A-202ENST00000375299 SDR42E1Q8WUS8 393 aa23.73■■□□□ 1.39
UPF3A-202ENST00000375299 CAPZA3Q96KX2 299 aa23.73■■□□□ 1.39
UPF3A-202ENST00000375299 TFR2Q9UP52 801 aa23.73■■□□□ 1.39
UPF3A-202ENST00000375299 IQSEC3Q9UPP2 1182 aaPredicted RBP23.73■■□□□ 1.39
UPF3A-202ENST00000375299 TRAPPC10P48553 1259 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 KIAA1328Q86T90 577 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 ZNF507Q8TCN5 953 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 SMARCC1Q92922 1105 aaPredicted RBP23.72■■□□□ 1.39
UPF3A-202ENST00000375299 JAKMIP2Q96AA8 810 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 PLEKHA4Q9H4M7 779 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 BTG4Q9NY30 223 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 LRP2BPQ9P2M1 347 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 NHSL1Q5SYE7 1610 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 PDS5AQ29RF7 1337 aaKnown RBP23.72■■□□□ 1.39
UPF3A-202ENST00000375299 TRIM49BA6NDI0 452 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 KRT86O43790 486 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 CALM1P0DP23 149 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 CALM2P0DP24 149 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 CALM3P0DP25 149 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 TMTC3Q6ZXV5 915 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 PACS2Q86VP3 889 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 CNTNAP5Q8WYK1 1306 aa23.72■■□□□ 1.39
UPF3A-202ENST00000375299 EEF1GP26641 437 aaKnown RBP23.71■■□□□ 1.39
UPF3A-202ENST00000375299 TROAPQ12815 778 aa23.71■■□□□ 1.39
UPF3A-202ENST00000375299 PIK3AP1Q6ZUJ8 805 aa23.71■■□□□ 1.39
UPF3A-202ENST00000375299 ADSSL1Q8N142 457 aa23.71■■□□□ 1.39
UPF3A-202ENST00000375299 PPM1EQ8WY54 764 aa23.71■■□□□ 1.39
UPF3A-202ENST00000375299 RIN2Q8WYP3 895 aaPredicted RBP23.71■■□□□ 1.39
UPF3A-202ENST00000375299 CRACR2AQ9BSW2 395 aa23.71■■□□□ 1.39
UPF3A-202ENST00000375299 SMIM22K7EJ46 135 aa23.71■■□□□ 1.39
UPF3A-202ENST00000375299 CYP7A1P22680 504 aa23.71■■□□□ 1.39
UPF3A-202ENST00000375299 BCAMP50895 628 aa23.71■■□□□ 1.39
UPF3A-202ENST00000375299 MEA1Q16626 185 aa23.71■■□□□ 1.39
UPF3A-202ENST00000375299 GNL3LQ9NVN8 582 aaKnown RBP23.71■■□□□ 1.39
UPF3A-202ENST00000375299 ZNF335Q9H4Z2 1342 aaPredicted RBP23.71■■□□□ 1.39
UPF3A-202ENST00000375299 ERVV-1B6SEH8 477 aa23.7■■□□□ 1.38
UPF3A-202ENST00000375299 MCM7P33993 719 aa23.7■■□□□ 1.38
UPF3A-202ENST00000375299 GGCXP38435 758 aa23.7■■□□□ 1.38
UPF3A-202ENST00000375299 SELENOOQ9BVL4 669 aa23.7■■□□□ 1.38
UPF3A-202ENST00000375299 PES1O00541 588 aaKnown RBP23.7■■□□□ 1.38
UPF3A-202ENST00000375299 CYLC1P35663 651 aaPredicted RBP23.7■■□□□ 1.38
UPF3A-202ENST00000375299 ADGRA1Q86SQ6 560 aa23.7■■□□□ 1.38
UPF3A-202ENST00000375299 CAGE1Q8TC20 777 aa23.7■■□□□ 1.38
UPF3A-202ENST00000375299 THAP9Q9H5L6 903 aa23.7■■□□□ 1.38
UPF3A-202ENST00000375299 ANO9A1A5B4 782 aa23.69■■□□□ 1.38
UPF3A-202ENST00000375299 DDAH1O94760 285 aa23.69■■□□□ 1.38
UPF3A-202ENST00000375299 DNAJC21Q5F1R6 531 aaKnown RBP23.69■■□□□ 1.38
UPF3A-202ENST00000375299 CCNI2Q6ZMN8 369 aaPredicted RBP23.69■■□□□ 1.38
UPF3A-202ENST00000375299 DZIP3Q86Y13 1208 aaKnown RBP23.69■■□□□ 1.38
UPF3A-202ENST00000375299 GSPT2Q8IYD1 628 aaKnown RBP23.69■■□□□ 1.38
UPF3A-202ENST00000375299 PLCD3Q8N3E9 789 aa23.69■■□□□ 1.38
UPF3A-202ENST00000375299 GDAP1L1Q96MZ0 367 aa23.69■■□□□ 1.38
UPF3A-202ENST00000375299 AGPSO00116 658 aa23.69■■□□□ 1.38
UPF3A-202ENST00000375299 SHOX2O60902 331 aaPredicted RBP23.69■■□□□ 1.38
UPF3A-202ENST00000375299 ZMYND10O75800 440 aa23.69■■□□□ 1.38
UPF3A-202ENST00000375299 MYBL2P10244 700 aa23.69■■□□□ 1.38
UPF3A-202ENST00000375299 LONP1P36776 959 aaKnown RBP23.69■■□□□ 1.38
UPF3A-202ENST00000375299 STAT6P42226 847 aa23.69■■□□□ 1.38
UPF3A-202ENST00000375299 IQCA1Q86XH1 822 aa23.69■■□□□ 1.38
UPF3A-202ENST00000375299 BAZ2AQ9UIF9 1905 aaKnown RBP23.68■■□□□ 1.38
UPF3A-202ENST00000375299 MAGEB6P1A0A0J9YX57 407 aa23.68■■□□□ 1.38
UPF3A-202ENST00000375299 PMS1P54277 932 aaKnown RBP23.68■■□□□ 1.38
UPF3A-202ENST00000375299 NLRP5P59047 1200 aa23.68■■□□□ 1.38
UPF3A-202ENST00000375299 ARL6IP4Q66PJ3 421 aaKnown RBP23.68■■□□□ 1.38
UPF3A-202ENST00000375299 EFCAB13Q8IY85 973 aa23.68■■□□□ 1.38
UPF3A-202ENST00000375299 ZNF34Q8IZ26 560 aa23.68■■□□□ 1.38
UPF3A-202ENST00000375299 ANKRD65E5RJM6 399 aa23.67■■□□□ 1.38
UPF3A-202ENST00000375299 DNM2P50570 870 aa23.67■■□□□ 1.38
UPF3A-202ENST00000375299 IL6STP40189 918 aaPredicted RBP23.67■■□□□ 1.38
UPF3A-202ENST00000375299 ICE2Q659A1 982 aa23.67■■□□□ 1.38
UPF3A-202ENST00000375299 IQCEQ6IPM2 695 aa23.67■■□□□ 1.38
UPF3A-202ENST00000375299 SRBD1Q8N5C6 995 aaKnown RBP23.67■■□□□ 1.38
UPF3A-202ENST00000375299 FAM76AQ8TAV0 307 aa23.67■■□□□ 1.38
UPF3A-202ENST00000375299 TTYH3Q9C0H2 523 aa23.67■■□□□ 1.38
UPF3A-202ENST00000375299 LACRTQ9GZZ8 138 aa23.67■■□□□ 1.38
UPF3A-202ENST00000375299 MAGEC2Q9UBF1 373 aaPredicted RBP23.67■■□□□ 1.38
UPF3A-202ENST00000375299 STRCQ7RTU9 1775 aa23.67■■□□□ 1.38
UPF3A-202ENST00000375299 RCCD1A6NED2 376 aa23.66■■□□□ 1.38
UPF3A-202ENST00000375299 PDE2AO00408 941 aaPredicted RBP23.66■■□□□ 1.38
UPF3A-202ENST00000375299 SRGNP10124 158 aa23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms