RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SPICE1Q8N0Z3 855 aa23.26■■□□□ 1.31
CLN3-250ENST00000636839 ADAMTS3O15072 1205 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 EPHX2P34913 555 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 PRKG1Q13976 671 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 TRIM29Q14134 588 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 PFKFB3Q16875 520 aaPredicted RBP23.25■■□□□ 1.31
CLN3-250ENST00000636839 CCDC96Q2M329 555 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 OXER1Q8TDS5 423 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 ZSCAN16Q9H4T2 348 aaPredicted RBP23.25■■□□□ 1.31
CLN3-250ENST00000636839 ISY1Q9ULR0 285 aaKnown RBP23.25■■□□□ 1.31
CLN3-250ENST00000636839 BTBD18B2RXH4 712 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 NDUFB10O96000 172 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 SCG2P13521 617 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 HOMER1Q86YM7 354 aa23.25■■□□□ 1.31
CLN3-250ENST00000636839 MYH6P13533 1939 aa23.24■■□□□ 1.31
CLN3-250ENST00000636839 MMP1P03956 469 aa23.24■■□□□ 1.31
CLN3-250ENST00000636839 CEBPZQ03701 1054 aaKnown RBP23.24■■□□□ 1.31
CLN3-250ENST00000636839 ZYXQ15942 572 aaKnown RBP23.24■■□□□ 1.31
CLN3-250ENST00000636839 TYW1BQ6NUM6 668 aa23.24■■□□□ 1.31
CLN3-250ENST00000636839 ZKSCAN4Q969J2 545 aaPredicted RBP23.24■■□□□ 1.31
CLN3-250ENST00000636839 ANP32EQ9BTT0 268 aa23.24■■□□□ 1.31
CLN3-250ENST00000636839 GADD45BO75293 160 aaPredicted RBP23.23■■□□□ 1.31
CLN3-250ENST00000636839 SLC1A4P43007 532 aa23.23■■□□□ 1.31
CLN3-250ENST00000636839 ASPRV1Q53RT3 343 aa23.23■■□□□ 1.31
CLN3-250ENST00000636839 PIGSQ96S52 555 aa23.23■■□□□ 1.31
CLN3-250ENST00000636839 SPZ1Q9BXG8 430 aa23.23■■□□□ 1.31
CLN3-250ENST00000636839 SSC5DA1L4H1 1573 aa23.23■■□□□ 1.31
CLN3-250ENST00000636839 GOLGA6L22H0YM25 854 aa23.23■■□□□ 1.31
CLN3-250ENST00000636839 NR5A1Q13285 461 aa23.23■■□□□ 1.31
CLN3-250ENST00000636839 PPP4R3BQ5MIZ7 849 aa23.23■■□□□ 1.31
CLN3-250ENST00000636839 LZTS2Q9BRK4 669 aa23.23■■□□□ 1.31
CLN3-250ENST00000636839 DIS3L2Q8IYB7 885 aaKnown RBP23.22■■□□□ 1.31
CLN3-250ENST00000636839 DCPSQ96C86 337 aaKnown RBP23.22■■□□□ 1.31
CLN3-250ENST00000636839 RIOX1Q9H6W3 641 aa23.22■■□□□ 1.31
CLN3-250ENST00000636839 TRAK2O60296 914 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 NPY5RQ15761 445 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 EAPPQ56P03 285 aaPredicted RBP23.21■■□□□ 1.31
CLN3-250ENST00000636839 WWC2Q6AWC2 1192 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 ADGRF4Q8IZF3 695 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 GMCL1P1Q8NEA9 526 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 PHF20Q9BVI0 1012 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 PITPNM2Q9BZ72 1349 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 ASNSP08243 561 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 DGKZQ13574 1117 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 WRNIP1Q96S55 665 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 TAF1DQ9H5J8 278 aaPredicted RBP23.21■■□□□ 1.31
CLN3-250ENST00000636839 ARHGEF10LQ9HCE6 1279 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 TMX2Q9Y320 296 aa23.21■■□□□ 1.31
CLN3-250ENST00000636839 USP17L10C9JJH3 530 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 CTNND1O60716 968 aaKnown RBP23.2■■□□□ 1.3
CLN3-250ENST00000636839 KRT85P78386 507 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 NOM1Q5C9Z4 860 aaKnown RBP23.2■■□□□ 1.3
CLN3-250ENST00000636839 KRT26Q7Z3Y9 468 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 HEATR3Q7Z4Q2 680 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 USP28Q96RU2 1077 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 ZNF341Q9BYN7 854 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 JMJD4Q9H9V9 463 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 POTEIP0CG38 1075 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 POTEJP0CG39 1038 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 U2AF2P26368 475 aaKnown RBP eCLIP23.2■■□□□ 1.3
CLN3-250ENST00000636839 DCAF15Q66K64 600 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 USP50Q70EL3 339 aaPredicted RBP23.2■■□□□ 1.3
CLN3-250ENST00000636839 SULF1Q8IWU6 871 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 DCAF4Q8WV16 495 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 ZNF112Q9UJU3 913 aa23.2■■□□□ 1.3
CLN3-250ENST00000636839 ZC3H4Q9UPT8 1303 aaKnown RBP23.19■■□□□ 1.3
CLN3-250ENST00000636839 FAM205CA6NFA0 338 aa23.19■■□□□ 1.3
CLN3-250ENST00000636839 SNAP25P60880 206 aa23.19■■□□□ 1.3
CLN3-250ENST00000636839 GNL2Q13823 731 aaKnown RBP23.19■■□□□ 1.3
CLN3-250ENST00000636839 EARS2Q5JPH6 523 aaKnown RBP23.19■■□□□ 1.3
CLN3-250ENST00000636839 RRP36Q96EU6 259 aaKnown RBP23.19■■□□□ 1.3
CLN3-250ENST00000636839 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.19■■□□□ 1.3
CLN3-250ENST00000636839 PPP2R3BQ9Y5P8 575 aa23.19■■□□□ 1.3
CLN3-250ENST00000636839 GPATCH4Q5T3I0 446 aaKnown RBP23.18■■□□□ 1.3
CLN3-250ENST00000636839 MYSM1Q5VVJ2 828 aa23.18■■□□□ 1.3
CLN3-250ENST00000636839 GPT2Q8TD30 523 aa23.18■■□□□ 1.3
CLN3-250ENST00000636839 STXBP3O00186 592 aa23.18■■□□□ 1.3
CLN3-250ENST00000636839 SMARCA1P28370 1054 aa23.18■■□□□ 1.3
CLN3-250ENST00000636839 RGS22Q8NE09 1264 aa23.18■■□□□ 1.3
CLN3-250ENST00000636839 KLRG1Q96E93 195 aa23.18■■□□□ 1.3
CLN3-250ENST00000636839 GMCL1Q96IK5 515 aa23.18■■□□□ 1.3
CLN3-250ENST00000636839 CLIC4Q9Y696 253 aa23.18■■□□□ 1.3
CLN3-250ENST00000636839 TMEM232C9JQI7 657 aa23.17■■□□□ 1.3
CLN3-250ENST00000636839 PPP1R11O60927 126 aaPredicted RBP23.17■■□□□ 1.3
CLN3-250ENST00000636839 NLRP5P59047 1200 aa23.17■■□□□ 1.3
CLN3-250ENST00000636839 SAFBQ15424 915 aaKnown RBP eCLIP23.17■■□□□ 1.3
CLN3-250ENST00000636839 LEO1Q8WVC0 666 aaPredicted RBP23.17■■□□□ 1.3
CLN3-250ENST00000636839 USP2O75604 605 aaPredicted RBP23.16■■□□□ 1.3
CLN3-250ENST00000636839 BMP3P12645 472 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 XBP1P17861 261 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 SUPT20HL1Q3ZLR7 823 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 FAM83BQ5T0W9 1011 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 BRAPQ7Z569 592 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 NOSTRINQ8IVI9 506 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 TMEM87AQ8NBN3 555 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 COA7Q96BR5 231 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 BARHL2Q9NY43 387 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 RBM27Q9P2N5 1060 aaKnown RBP23.16■■□□□ 1.3
CLN3-250ENST00000636839 ATAD5Q96QE3 1844 aa23.16■■□□□ 1.3
CLN3-250ENST00000636839 SPATA32Q96LK8 384 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms