RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 VCPKMTQ9H867 229 aa13.59□□□□□ -0.23
PDPN-211ENST00000617617 AS3MTQ9HBK9 375 aa13.59□□□□□ -0.23
PDPN-211ENST00000617617 SCG2P13521 617 aa13.59□□□□□ -0.23
PDPN-211ENST00000617617 AKAP17AQ02040 695 aaKnown RBP13.59□□□□□ -0.23
PDPN-211ENST00000617617 GALNT17Q6IS24 598 aa13.59□□□□□ -0.23
PDPN-211ENST00000617617 CLEC10AQ8IUN9 316 aa13.59□□□□□ -0.23
PDPN-211ENST00000617617 CDCA5Q96FF9 252 aa13.59□□□□□ -0.23
PDPN-211ENST00000617617 NDUFB10O96000 172 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 XBP1P17861 261 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 U2AF2P26368 475 aaKnown RBP eCLIP13.58□□□□□ -0.24
PDPN-211ENST00000617617 PPP1R18Q6NYC8 613 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 USP17L2Q6R6M4 530 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 BRAPQ7Z569 592 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 LDHDQ86WU2 507 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 TMEM87AQ8NBN3 555 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 DAGLBQ8NCG7 672 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 PHF20Q9BVI0 1012 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 H3BQV1 296 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 PRKCSHP14314 528 aaPredicted RBP13.58□□□□□ -0.24
PDPN-211ENST00000617617 IFFO2Q5TF58 517 aa13.58□□□□□ -0.24
PDPN-211ENST00000617617 BAZ2BQ9UIF8 2168 aaKnown RBP13.57□□□□□ -0.24
PDPN-211ENST00000617617 ESYT2A0FGR8 921 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 ADM5C9JUS6 153 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 BAG4O95429 457 aaKnown RBP13.57□□□□□ -0.24
PDPN-211ENST00000617617 MMP1P03956 469 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 PTPRAP18433 802 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 NF2P35240 595 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 USP14P54578 494 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 FKBP1BP68106 108 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 MAP3K9P80192 1104 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 FOXP1Q9H334 677 aaPredicted RBP13.57□□□□□ -0.24
PDPN-211ENST00000617617 MORC2Q9Y6X9 1032 aaPredicted RBP13.57□□□□□ -0.24
PDPN-211ENST00000617617 V9GY48 417 aaPredicted RBP13.57□□□□□ -0.24
PDPN-211ENST00000617617 COL11A1P12107 1806 aaPredicted RBP13.57□□□□□ -0.24
PDPN-211ENST00000617617 C19orf81C9J6K1 198 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 SH3D19Q5HYK7 790 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 KRT40Q6A162 431 aa13.57□□□□□ -0.24
PDPN-211ENST00000617617 RRP36Q96EU6 259 aaKnown RBP13.57□□□□□ -0.24
PDPN-211ENST00000617617 PPP1R12BO60237 982 aaPredicted RBP13.56□□□□□ -0.24
PDPN-211ENST00000617617 BMP3P12645 472 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 SLC1A4P43007 532 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 IREB2P48200 963 aaKnown RBP13.56□□□□□ -0.24
PDPN-211ENST00000617617 KIF23Q02241 960 aaPredicted RBP13.56□□□□□ -0.24
PDPN-211ENST00000617617 TRIM29Q14134 588 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 ACER1Q8TDN7 264 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 WRNIP1Q96S55 665 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 BARHL2Q9NY43 387 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 WDR46O15213 610 aaKnown RBP13.56□□□□□ -0.24
PDPN-211ENST00000617617 INPP5BP32019 993 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 FAM160B2Q86V87 743 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 SHISA4Q96DD7 197 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 PICK1Q9NRD5 415 aa13.56□□□□□ -0.24
PDPN-211ENST00000617617 PNMA6FA0A0J9YX94 578 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 VPS37CA5D8V6 355 aaPredicted RBP13.55□□□□□ -0.24
PDPN-211ENST00000617617 CCDC148Q8NFR7 591 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 FEM1BQ9UK73 627 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 SCAF8Q9UPN6 1271 aaKnown RBP13.55□□□□□ -0.24
PDPN-211ENST00000617617 AFG3L2Q9Y4W6 797 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 SNCAIPQ9Y6H5 919 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 DDX11L8A8MPP1 907 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 CALML3P27482 149 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 ECE1P42892 770 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 NPY5RQ15761 445 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 LDLRAD1Q5T700 205 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.55□□□□□ -0.24
PDPN-211ENST00000617617 ADGRF4Q8IZF3 695 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 CMTR1Q8N1G2 835 aaKnown RBP13.55□□□□□ -0.24
PDPN-211ENST00000617617 ZNF280CQ8ND82 737 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 CCDC12Q8WUD4 166 aaPredicted RBP13.55□□□□□ -0.24
PDPN-211ENST00000617617 JMJD4Q9H9V9 463 aa13.55□□□□□ -0.24
PDPN-211ENST00000617617 STXBP3O00186 592 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 MCM4P33991 863 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 TRAF1Q13077 416 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 RBM46Q8TBY0 533 aaKnown RBP13.54□□□□□ -0.24
PDPN-211ENST00000617617 TNFRSF25Q93038 417 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 AIFM3Q96NN9 605 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 ELP1O95163 1332 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 USP17L10C9JJH3 530 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 M0R2N6 131 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 FDX1P10109 184 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 BACE1P56817 501 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 KIAA1755Q5JYT7 1200 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 ZMYND12Q9H0C1 365 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 FRMPD2Q68DX3 1309 aaPredicted RBP13.54□□□□□ -0.24
PDPN-211ENST00000617617 ZBTB5O15062 677 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 GOLGA8HP0CJ92 632 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 ATP2B2Q01814 1243 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 PPATQ06203 517 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 RASGRP2Q7LDG7 609 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 ANKRD13AQ8IZ07 590 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 CHURC1Q8WUH1 139 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 MAF1Q9H063 256 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 RRAGCQ9HB90 399 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 SEC63Q9UGP8 760 aaKnown RBP13.54□□□□□ -0.24
PDPN-211ENST00000617617 PNMA2Q9UL42 364 aa13.54□□□□□ -0.24
PDPN-211ENST00000617617 SAFBQ15424 915 aaKnown RBP eCLIP13.53□□□□□ -0.24
PDPN-211ENST00000617617 NFKBIBQ15653 356 aa13.53□□□□□ -0.24
PDPN-211ENST00000617617 SYDE2Q5VT97 1194 aa13.53□□□□□ -0.24
PDPN-211ENST00000617617 WWC2Q6AWC2 1192 aa13.53□□□□□ -0.24
PDPN-211ENST00000617617 GLT8D2Q9H1C3 349 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms