RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 USP17L24Q0WX57 530 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 FAM47AQ5JRC9 791 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 SPICE1Q8N0Z3 855 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 FBXL16Q8N461 479 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 NEDD1Q8NHV4 660 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 TRIM47Q96LD4 638 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 C12orf42Q96LP6 360 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 UBAC1Q9BSL1 405 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.95■□□□□ 0.3
USE1-210ENST00000601662 RPAP3Q9H6T3 665 aaPredicted RBP16.95■□□□□ 0.3
USE1-210ENST00000601662 RBM19Q9Y4C8 960 aaKnown RBP16.95■□□□□ 0.3
USE1-210ENST00000601662 LOC285556D6RIA3 1793 aa16.94■□□□□ 0.3
USE1-210ENST00000601662 FCGRTP55899 365 aa16.94■□□□□ 0.3
USE1-210ENST00000601662 HERVK_113P62684 666 aa16.94■□□□□ 0.3
USE1-210ENST00000601662 KIAA1755Q5JYT7 1200 aa16.94■□□□□ 0.3
USE1-210ENST00000601662 SAMD1Q6SPF0 538 aaPredicted RBP16.94■□□□□ 0.3
USE1-210ENST00000601662 PAGR1Q9BTK6 254 aa16.94■□□□□ 0.3
USE1-210ENST00000601662 SH2D4AQ9H788 454 aa16.94■□□□□ 0.3
USE1-210ENST00000601662 TMX2Q9Y320 296 aa16.94■□□□□ 0.3
USE1-210ENST00000601662 PTCH2Q9Y6C5 1203 aa16.94■□□□□ 0.3
USE1-210ENST00000601662 ZSWIM8A7E2V4 1837 aa16.93■□□□□ 0.3
USE1-210ENST00000601662 IFIT3O14879 490 aaKnown RBP16.93■□□□□ 0.3
USE1-210ENST00000601662 HOXD10P28358 340 aa16.93■□□□□ 0.3
USE1-210ENST00000601662 ANP32AP39687 249 aaKnown RBP16.93■□□□□ 0.3
USE1-210ENST00000601662 FAM110CQ1W6H9 321 aa16.93■□□□□ 0.3
USE1-210ENST00000601662 CATSPERGQ6ZRH7 1159 aa16.93■□□□□ 0.3
USE1-210ENST00000601662 CYB5R4Q7L1T6 521 aa16.93■□□□□ 0.3
USE1-210ENST00000601662 TTC14Q96N46 770 aa16.93■□□□□ 0.3
USE1-210ENST00000601662 ZSCAN10Q96SZ4 725 aaPredicted RBP16.93■□□□□ 0.3
USE1-210ENST00000601662 TANGO6Q9C0B7 1094 aa16.93■□□□□ 0.3
USE1-210ENST00000601662 VCPKMTQ9H867 229 aa16.93■□□□□ 0.3
USE1-210ENST00000601662 TNPO2O14787 897 aaKnown RBP16.92■□□□□ 0.3
USE1-210ENST00000601662 CPA1P15085 419 aa16.92■□□□□ 0.3
USE1-210ENST00000601662 TMEM67Q5HYA8 995 aa16.92■□□□□ 0.3
USE1-210ENST00000601662 Q6ZUG5 572 aa16.92■□□□□ 0.3
USE1-210ENST00000601662 CHST3Q7LGC8 479 aa16.92■□□□□ 0.3
USE1-210ENST00000601662 DGKHQ86XP1 1220 aa16.92■□□□□ 0.3
USE1-210ENST00000601662 IGDCC4Q8TDY8 1250 aa16.92■□□□□ 0.3
USE1-210ENST00000601662 SNX21Q969T3 373 aa16.92■□□□□ 0.3
USE1-210ENST00000601662 TXNRD2Q9NNW7 524 aa16.92■□□□□ 0.3
USE1-210ENST00000601662 CLIP2Q9UDT6 1046 aa16.92■□□□□ 0.3
USE1-210ENST00000601662 MYCP01106 439 aaPredicted RBP16.91■□□□□ 0.3
USE1-210ENST00000601662 GNRH1P01148 92 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 LIFRP42702 1097 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 ANTXR2P58335 489 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 CCAR1Q8IX12 1150 aaKnown RBP16.91■□□□□ 0.3
USE1-210ENST00000601662 GPRC5AQ8NFJ5 357 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 ANKS1AQ92625 1134 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 CEP95Q96GE4 821 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 AGXT2Q9BYV1 514 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 GOPCQ9HD26 462 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 RBPJLQ9UBG7 517 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 SRRDQ9UH36 339 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 MYPNQ86TC9 1320 aa16.91■□□□□ 0.3
USE1-210ENST00000601662 SOX10P56693 466 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 PRKCZQ05513 592 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 BECN1Q14457 450 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 WTAPQ15007 396 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 Q3C1V9 767 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 RAET1EQ8TD07 263 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 LPAR1Q92633 364 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 CHMP4CQ96CF2 233 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 NYAP2Q9P242 653 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 MORF4L1Q9UBU8 362 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 GABRQQ9UN88 632 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 LIMCH1Q9UPQ0 1083 aa16.9■□□□□ 0.3
USE1-210ENST00000601662 PLIN4Q96Q06 1357 aa16.89■□□□□ 0.3
USE1-210ENST00000601662 IGKV6D-41A0A0C4DH26 115 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 SH2B2O14492 632 aaPredicted RBP16.89■□□□□ 0.29
USE1-210ENST00000601662 FLOT1O75955 427 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 AK2P54819 239 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 COG2Q14746 738 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 SLC9C1Q4G0N8 1177 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 IFIT1BQ5T764 474 aaKnown RBP16.89■□□□□ 0.29
USE1-210ENST00000601662 POTEEQ6S8J3 1075 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 SYNE3Q6ZMZ3 975 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 NFXL1Q6ZNB6 911 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 SH3TC2Q8TF17 1288 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 COA7Q96BR5 231 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 ZSCAN31Q96LW9 406 aaPredicted RBP16.89■□□□□ 0.29
USE1-210ENST00000601662 TCEANC2Q96MN5 208 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 NUP88Q99567 741 aaPredicted RBP16.89■□□□□ 0.29
USE1-210ENST00000601662 ZKSCAN3Q9BRR0 538 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 IL17RBQ9NRM6 502 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 MTMR4Q9NYA4 1195 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 TNKSO95271 1327 aa16.89■□□□□ 0.29
USE1-210ENST00000601662 CCDC69A6NI79 296 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 SPDYE16A6NNV3 312 aaPredicted RBP16.88■□□□□ 0.29
USE1-210ENST00000601662 F5H6K3 240 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 TTLL1O95922 423 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 PRMT2P55345 433 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 EVCP57679 992 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 ERVK-9P63128 1117 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 ERVK-24P63145 666 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 KLRC3Q07444 240 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 TOB2Q14106 344 aaPredicted RBP16.88■□□□□ 0.29
USE1-210ENST00000601662 SEC23AQ15436 765 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 WDR78Q5VTH9 848 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 SGMS1Q86VZ5 419 aa16.88■□□□□ 0.29
USE1-210ENST00000601662 HSCBQ8IWL3 235 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms