RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 PRDM1O75626 825 aa16.77■□□□□ 0.28
SMARCA4-219ENST00000592604 WDR93Q6P2C0 686 aa16.77■□□□□ 0.28
SMARCA4-219ENST00000592604 VPS18Q9P253 973 aa16.77■□□□□ 0.28
SMARCA4-219ENST00000592604 NHSL1Q5SYE7 1610 aa16.77■□□□□ 0.28
SMARCA4-219ENST00000592604 RHOXF2BP0C7M4 288 aa16.77■□□□□ 0.27
SMARCA4-219ENST00000592604 PAK1Q13153 545 aa16.77■□□□□ 0.27
SMARCA4-219ENST00000592604 TCP11X2Q5H9J9 407 aa16.77■□□□□ 0.27
SMARCA4-219ENST00000592604 ANKRD20A12PQ8NF67 263 aa16.77■□□□□ 0.27
SMARCA4-219ENST00000592604 MTRQ99707 1265 aa16.77■□□□□ 0.27
SMARCA4-219ENST00000592604 RHOXF2Q9BQY4 288 aa16.77■□□□□ 0.27
SMARCA4-219ENST00000592604 LRP2BPQ9P2M1 347 aa16.77■□□□□ 0.27
SMARCA4-219ENST00000592604 MYO6Q9UM54 1294 aa16.77■□□□□ 0.27
SMARCA4-219ENST00000592604 MYH13Q9UKX3 1938 aa16.77■□□□□ 0.27
SMARCA4-219ENST00000592604 MINDY4BA8MYZ0 360 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 PLEKHA8P1O95397 391 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 TROAPQ12815 778 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 CASP8Q14790 479 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 CATIPQ7Z7H3 387 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 TRERF1Q96PN7 1200 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 NUP88Q99567 741 aaPredicted RBP16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 VPS16Q9H269 839 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 SLIT2O94813 1529 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 CLGNO14967 610 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 RPS6KA5O75582 802 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 TFRCP02786 760 aaKnown RBP16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 CALM1P0DP23 149 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 CALM2P0DP24 149 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 CALM3P0DP25 149 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 TRAPPC10P48553 1259 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 ZNF658Q5TYW1 1059 aaPredicted RBP16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 STAMQ92783 540 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 SUGCTQ9HAC7 445 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 DLEC1Q9Y238 1755 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 CYP7A1P22680 504 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 CDC25AP30304 524 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 KRT9P35527 623 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 IL6STP40189 918 aaPredicted RBP16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 NOM1Q5C9Z4 860 aaKnown RBP16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 BRINP3Q76B58 766 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 DZIP3Q86Y13 1208 aaKnown RBP16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 SDR42E1Q8WUS8 393 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 BLZF1Q9H2G9 400 aa16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 IQSEC3Q9UPP2 1182 aaPredicted RBP16.76■□□□□ 0.27
SMARCA4-219ENST00000592604 hCG_1642624A0A1W2PR95 340 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 KCNJ18B7U540 433 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 FGRP09769 529 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 KCNJ12Q14500 433 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 IFIT1BQ5T764 474 aaKnown RBP16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 ADGRA1Q86SQ6 560 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 SLF1Q9BQI6 1058 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 TAB2Q9NYJ8 693 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 EPN1Q9Y6I3 576 aaPredicted RBP16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 N4BP1O75113 896 aaKnown RBP16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 TMTC3Q6ZXV5 915 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 NOA1Q8NC60 698 aaKnown RBP16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 FAM71BQ8TC56 605 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 NELFBQ8WX92 580 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 DUOX1Q9NRD9 1551 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 RMND1Q9NWS8 449 aa16.75■□□□□ 0.27
SMARCA4-219ENST00000592604 COBLO75128 1261 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 EVA1CP58658 441 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 TRAPPC11Q7Z392 1133 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 REXO2Q9Y3B8 237 aaKnown RBP16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 MAGEB6P1A0A0J9YX57 407 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 H7C1D1 291 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 PSMD14O00487 310 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 DDAH1O94760 285 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 NDUFA10O95299 355 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 PCP11498 1178 aaKnown RBP16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 MMP14P50281 582 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 HAUS4Q9H6D7 363 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 FAN1Q9Y2M0 1017 aa16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 SOS2Q07890 1332 aaPredicted RBP16.74■□□□□ 0.27
SMARCA4-219ENST00000592604 SMIM22K7EJ46 135 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 IVLP07476 585 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 IL17AQ16552 155 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 LEKR1Q6ZMV7 388 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 CHP1Q99653 195 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 RIOK1Q9BRS2 568 aaKnown RBP16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 VIPAS39Q9H9C1 493 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 MED4Q9NPJ6 270 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 CNTNAP5Q8WYK1 1306 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 BCL9O00512 1426 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 WWC2Q6AWC2 1192 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 ZNF662Q6ZS27 426 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 IQCA1Q86XH1 822 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 RPN1P04843 607 aaKnown RBP16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 SUSD4Q5VX71 490 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 ARL6IP4Q66PJ3 421 aaKnown RBP16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 IRF2BP1Q8IU81 584 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 OR8K1Q8NGG5 319 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 DNAJC7Q99615 494 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 BRIP1Q9BX63 1249 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 ACBD3Q9H3P7 528 aa16.73■□□□□ 0.27
SMARCA4-219ENST00000592604 A0A1W2PQC6 194 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 MYO1CO00159 1063 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 UBXN1Q04323 297 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 NCAPH2Q6IBW4 605 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 SRLQ86TD4 932 aa16.72■□□□□ 0.27
SMARCA4-219ENST00000592604 ZBTB9Q96C00 473 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms