RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 ZFP64Q9NPA5 681 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 GPATCH2Q9NW75 528 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 PRR13Q9NZ81 148 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 PCDHB12Q9Y5F1 795 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 CBFA2T2O43439 604 aa7.46□□□□□ -1.22
NUP88-208ENST00000574087 WNT11O96014 354 aa7.46□□□□□ -1.22
NUP88-208ENST00000574087 TPP2P29144 1249 aaPredicted RBP7.46□□□□□ -1.22
NUP88-208ENST00000574087 KIAA1211LQ6NV74 962 aa7.46□□□□□ -1.22
NUP88-208ENST00000574087 DRC1Q96MC2 740 aa7.46□□□□□ -1.22
NUP88-208ENST00000574087 HDAC8Q9BY41 377 aa7.46□□□□□ -1.22
NUP88-208ENST00000574087 PAK6Q9NQU5 681 aaPredicted RBP7.46□□□□□ -1.22
NUP88-208ENST00000574087 FAM86C1Q9NVL1 165 aa7.46□□□□□ -1.22
NUP88-208ENST00000574087 ZNF451Q9Y4E5 1061 aa7.46□□□□□ -1.22
NUP88-208ENST00000574087 SIGLEC6O43699 453 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 CD247P20963 164 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 RAB33AQ14088 237 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 NCAPHQ15003 741 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 FXNQ16595 210 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 LARP1BQ659C4 914 aaKnown RBP7.45□□□□□ -1.22
NUP88-208ENST00000574087 C6orf15Q6UXA7 325 aaPredicted RBP7.45□□□□□ -1.22
NUP88-208ENST00000574087 TMPRSS7Q7RTY8 843 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 FAM178BQ8IXR5 827 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 CKAP2LQ8IYA6 745 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 CELF2-AS1Q8N7Q2 184 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 SYTL5Q8TDW5 730 aaPredicted RBP7.45□□□□□ -1.22
NUP88-208ENST00000574087 HAUS7Q99871 368 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 HIRIP3Q9BW71 556 aaPredicted RBP7.45□□□□□ -1.22
NUP88-208ENST00000574087 ASCC2Q9H1I8 757 aaPredicted RBP7.45□□□□□ -1.22
NUP88-208ENST00000574087 FBXL21Q9UKT6 434 aa7.45□□□□□ -1.22
NUP88-208ENST00000574087 ANGEL1Q9UNK9 670 aaKnown RBP7.45□□□□□ -1.22
NUP88-208ENST00000574087 R3HCC1Q9Y3T6 440 aaKnown RBP7.45□□□□□ -1.22
NUP88-208ENST00000574087 PRAMEF1O95521 474 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 ESR1P03372 595 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 RANGAP1P46060 587 aaPredicted RBP7.44□□□□□ -1.22
NUP88-208ENST00000574087 NBPF6Q5VWK0 638 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 DAGLBQ8NCG7 672 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 FLCNQ8NFG4 579 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 NBPF4Q96M43 638 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 KLHL25Q9H0H3 589 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 GP6Q9HCN6 339 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 GFOD1Q9NXC2 390 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 SUSD2Q9UGT4 822 aa7.44□□□□□ -1.22
NUP88-208ENST00000574087 B2RBV5 119 aa7.43□□□□□ -1.22
NUP88-208ENST00000574087 ZNF445P59923 1031 aa7.43□□□□□ -1.22
NUP88-208ENST00000574087 IKZF1Q13422 519 aa7.43□□□□□ -1.22
NUP88-208ENST00000574087 DDR2Q16832 855 aa7.43□□□□□ -1.22
NUP88-208ENST00000574087 CLEC16AQ2KHT3 1053 aa7.43□□□□□ -1.22
NUP88-208ENST00000574087 ANGEL2Q5VTE6 544 aaKnown RBP7.43□□□□□ -1.22
NUP88-208ENST00000574087 Q8N3U1 123 aa7.43□□□□□ -1.22
NUP88-208ENST00000574087 ZNF655Q8N720 491 aaPredicted RBP7.43□□□□□ -1.22
NUP88-208ENST00000574087 CHST7Q9NS84 486 aa7.43□□□□□ -1.22
NUP88-208ENST00000574087 LMCD1Q9NZU5 365 aa7.43□□□□□ -1.22
NUP88-208ENST00000574087 MINPP1Q9UNW1 487 aa7.43□□□□□ -1.22
NUP88-208ENST00000574087 DDAH1O94760 285 aa7.42□□□□□ -1.22
NUP88-208ENST00000574087 GJB6O95452 261 aa7.42□□□□□ -1.22
NUP88-208ENST00000574087 EPHX1P07099 455 aa7.42□□□□□ -1.22
NUP88-208ENST00000574087 FUT4P22083 530 aa7.42□□□□□ -1.22
NUP88-208ENST00000574087 TCEAL1Q15170 157 aa7.42□□□□□ -1.22
NUP88-208ENST00000574087 HEATR6Q6AI08 1181 aaKnown RBP7.42□□□□□ -1.22
NUP88-208ENST00000574087 MRM1Q6IN84 353 aaKnown RBP7.42□□□□□ -1.22
NUP88-208ENST00000574087 TCTN2Q96GX1 697 aa7.42□□□□□ -1.22
NUP88-208ENST00000574087 ST7Q9NRC1 585 aa7.42□□□□□ -1.22
NUP88-208ENST00000574087 WHRNQ9P202 907 aa7.42□□□□□ -1.22
NUP88-208ENST00000574087 PPP1R1BQ9UD71 204 aaPredicted RBP7.42□□□□□ -1.22
NUP88-208ENST00000574087 DUSP13Q9UII6 198 aa7.42□□□□□ -1.22
NUP88-208ENST00000574087 A0A087WZG4 1122 aa7.41□□□□□ -1.22
NUP88-208ENST00000574087 ANKRD34BA5PLL1 514 aa7.41□□□□□ -1.22
NUP88-208ENST00000574087 ITGA4P13612 1032 aa7.41□□□□□ -1.22
NUP88-208ENST00000574087 ZNF143P52747 638 aaPredicted RBP7.41□□□□□ -1.22
NUP88-208ENST00000574087 CREG2Q8IUH2 290 aa7.41□□□□□ -1.22
NUP88-208ENST00000574087 USHBP1Q8N6Y0 703 aa7.41□□□□□ -1.22
NUP88-208ENST00000574087 ZNF513Q8N8E2 541 aaPredicted RBP7.41□□□□□ -1.22
NUP88-208ENST00000574087 UBXN4Q92575 508 aa7.41□□□□□ -1.22
NUP88-208ENST00000574087 TRIM55Q9BYV6 548 aa7.41□□□□□ -1.22
NUP88-208ENST00000574087 CARS2Q9HA77 564 aaKnown RBP7.41□□□□□ -1.22
NUP88-208ENST00000574087 FHOD1Q9Y613 1164 aa7.41□□□□□ -1.22
NUP88-208ENST00000574087 CTSKP43235 329 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 GP2P55259 537 aaKnown RBP7.4□□□□□ -1.22
NUP88-208ENST00000574087 ZP2Q05996 745 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 SERINC3Q13530 473 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 NOL9Q5SY16 702 aaKnown RBP7.4□□□□□ -1.22
NUP88-208ENST00000574087 SOGA3Q5TF21 947 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 TP53INP2Q8IXH6 220 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 AGBL5Q8NDL9 886 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 BRF1Q92994 677 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 FGD4Q96M96 766 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 GBP3Q9H0R5 595 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 MSRB2Q9Y3D2 182 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 PCDHA11Q9Y5I1 949 aa7.4□□□□□ -1.22
NUP88-208ENST00000574087 FIBCD1Q8N539 461 aa7.39□□□□□ -1.23
NUP88-208ENST00000574087 LINC00116Q8NCU8 138 aa7.39□□□□□ -1.23
NUP88-208ENST00000574087 DNAJC2Q99543 621 aaKnown RBP7.39□□□□□ -1.23
NUP88-208ENST00000574087 APBA2Q99767 749 aa7.39□□□□□ -1.23
NUP88-208ENST00000574087 SIRPGQ9P1W8 387 aa7.39□□□□□ -1.23
NUP88-208ENST00000574087 DIS3Q9Y2L1 958 aaKnown RBP7.39□□□□□ -1.23
NUP88-208ENST00000574087 MEIS1O00470 390 aa7.38□□□□□ -1.23
NUP88-208ENST00000574087 SUSD5O60279 629 aa7.38□□□□□ -1.23
NUP88-208ENST00000574087 PPM1BO75688 479 aa7.38□□□□□ -1.23
NUP88-208ENST00000574087 EGR3Q06889 387 aa7.38□□□□□ -1.23
NUP88-208ENST00000574087 SLC23A3Q6PIS1 610 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms