RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 SPA17Q15506 151 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 JAKMIP2Q96AA8 810 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 SAR1BQ9Y6B6 198 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 MARCH6O60337 910 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 RNF40O75150 1001 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 NDUFA10O95299 355 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 SARSP49591 514 aaKnown RBP16.28■□□□□ 0.2
VPS35-210ENST00000568784 ASIC1P78348 528 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 PSMA7O14818 248 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 PARP1P09874 1014 aaKnown RBP16.28■□□□□ 0.2
VPS35-210ENST00000568784 RNASE9P60153 205 aaKnown RBP16.28■□□□□ 0.2
VPS35-210ENST00000568784 MAP9Q49MG5 647 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 CCDC152Q4G0S7 254 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 CSGALNACT2Q8N6G5 542 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 POLD4Q9HCU8 107 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 AFDNP55196 1824 aaKnown RBP16.27■□□□□ 0.2
VPS35-210ENST00000568784 MROH5Q6ZUA9 1318 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 PPP1R3GB7ZBB8 358 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 KRT86O43790 486 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 SSBP05455 408 aaKnown RBP eCLIP16.27■□□□□ 0.2
VPS35-210ENST00000568784 PRCPP42785 496 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 WHAMMP3Q1A5X7 153 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 CAVIN4Q5BKX8 364 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 STAG1Q8WVM7 1258 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 MMRN2Q9H8L6 949 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 LMO7Q8WWI1 1683 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 BMP15O95972 392 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 IVLP07476 585 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 AFAP1L1Q8TED9 768 aa16.27■□□□□ 0.2
VPS35-210ENST00000568784 TCRBV5S4A2TA0A5A2 114 aa16.27■□□□□ 0.19
VPS35-210ENST00000568784 FAM170AA1A519 330 aa16.27■□□□□ 0.19
VPS35-210ENST00000568784 ZNF185O15231 689 aa16.27■□□□□ 0.19
VPS35-210ENST00000568784 ATP1A1P05023 1023 aaKnown RBP16.27■□□□□ 0.19
VPS35-210ENST00000568784 CXCR5P32302 372 aa16.27■□□□□ 0.19
VPS35-210ENST00000568784 CHRNDQ07001 517 aa16.27■□□□□ 0.19
VPS35-210ENST00000568784 TCP11X2Q5H9J9 407 aa16.27■□□□□ 0.19
VPS35-210ENST00000568784 RASGRP2Q7LDG7 609 aa16.27■□□□□ 0.19
VPS35-210ENST00000568784 ZNF579Q8NAF0 562 aaKnown RBP16.27■□□□□ 0.19
VPS35-210ENST00000568784 TFCP2L1Q9NZI6 479 aa16.27■□□□□ 0.19
VPS35-210ENST00000568784 MRC1P22897 1456 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 AKR1B10O60218 316 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 VEGFAP15692 232 aaPredicted RBP16.26■□□□□ 0.19
VPS35-210ENST00000568784 SUSD4Q5VX71 490 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 DTHD1Q6ZMT9 781 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 RMND1Q9NWS8 449 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 CYLC1P35663 651 aaPredicted RBP16.26■□□□□ 0.19
VPS35-210ENST00000568784 EVX2Q03828 476 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 INF2Q27J81 1249 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 TDRD12Q587J7 1177 aaKnown RBP16.26■□□□□ 0.19
VPS35-210ENST00000568784 CCDC42Q96M95 316 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 KAT14Q9H8E8 782 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 MKNK2Q9HBH9 465 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 ARID4AP29374 1257 aaPredicted RBP16.26■□□□□ 0.19
VPS35-210ENST00000568784 C2orf54Q08AI8 447 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 MMS19Q96T76 1030 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 FAM207AQ9NSI2 230 aaPredicted RBP16.26■□□□□ 0.19
VPS35-210ENST00000568784 MCM9Q9NXL9 1143 aa16.26■□□□□ 0.19
VPS35-210ENST00000568784 LRRIQ3A6PVS8 624 aaPredicted RBP16.25■□□□□ 0.19
VPS35-210ENST00000568784 IBSPP21815 317 aaPredicted RBP16.25■□□□□ 0.19
VPS35-210ENST00000568784 KIF5AQ12840 1032 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 SND1Q7KZF4 910 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS35-210ENST00000568784 ADGRA1Q86SQ6 560 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 BTG4Q9NY30 223 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 CYP2D6P10635 497 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 ATP2B2Q01814 1243 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 TRIM28Q13263 835 aaKnown RBP16.25■□□□□ 0.19
VPS35-210ENST00000568784 TICAM2Q86XR7 235 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 MICALL1Q8N3F8 863 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 SMCR8Q8TEV9 937 aaPredicted RBP16.25■□□□□ 0.19
VPS35-210ENST00000568784 FAM107BQ9H098 131 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 CPVLQ9H3G5 476 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 ABCC12Q96J65 1359 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 FAM237AA0A1B0GTK4 181 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 GTPBP6O43824 516 aaPredicted RBP16.25■□□□□ 0.19
VPS35-210ENST00000568784 ARID5AQ03989 594 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 L1RE1Q9UN81 338 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 XDHP47989 1333 aa16.25■□□□□ 0.19
VPS35-210ENST00000568784 PDE4DQ08499 809 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 ALX1Q15699 326 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 LETM2Q2VYF4 491 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 TYW1BQ6NUM6 668 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 CCDC51Q96ER9 411 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 USP5P45974 858 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 KLK7P49862 253 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 SLC7A5Q01650 507 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 KRT26Q7Z3Y9 468 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 NOC4LQ9BVI4 516 aaKnown RBP16.24■□□□□ 0.19
VPS35-210ENST00000568784 EXOC1Q9NV70 894 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 GOLGA8HP0CJ92 632 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 SCG2P13521 617 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 ATP6V1AP38606 617 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 ZHX3Q9H4I2 956 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 DUSP10Q9Y6W6 482 aa16.24■□□□□ 0.19
VPS35-210ENST00000568784 N4BP2Q86UW6 1770 aaPredicted RBP16.24■□□□□ 0.19
VPS35-210ENST00000568784 KRT83P78385 493 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 CDK5RAP3Q96JB5 506 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 AGPAT5Q9NUQ2 364 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 ABCC6O95255 1503 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 RIC1Q4ADV7 1423 aa16.23■□□□□ 0.19
VPS35-210ENST00000568784 SPATA31A3Q5VYP0 1347 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms